Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l07
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    28   1.2  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   2.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   6.6  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   6.6  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   8.7  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.7  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 187  WDHECGITALHPLVRDAFVRFH 122
            W H C +  ++ L+R+AFV  H
Sbjct: 1030 WTHACDVDQMNSLLREAFVLLH 1051


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 367 HFQQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQ 474
           H  QLR+  L N F+ K+E  I   + +  +PF+ Q
Sbjct: 54  HGPQLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQ 89


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 239 LPSQLHVDPRVLWCPLTTIRYRNTYPQRVAAKTNRILSRKLVG 367
           LP+++     V   PL    Y N Y Q V A T+R  S  + G
Sbjct: 220 LPTRMAATELVGHIPLRAANYANEYSQDVPASTHRAASELVHG 262


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 439 ENLRNSVPFVRQLSTDSVKTKTEYDNEDGTP 531
           E + +++P++  L   + K  +EYDNE   P
Sbjct: 224 EYVNDAIPYILSLYRQNRKISSEYDNEAFPP 254


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 635 DVYPDENPTFIEPTETAN 582
           DV+PD NP F E T  +N
Sbjct: 542 DVFPDSNPVFDEFTNISN 559


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 361 RRHFQQLRQISLGNEFK-YKMEMEIKDENLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYK 537
           R H Q    +SLG EF  Y  ++    E + N++P +  L+       T  +  +G   K
Sbjct: 203 RTHMQDATPLSLGQEFSGYVTQVGYGIERINNALPRLCLLAQGGTAVGTGLNTFEGFDVK 262


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +3

Query: 198 GAFETNALSVNNQHFPRNFMWI 263
           G ++ +++S++N  FP +FM++
Sbjct: 17  GVYKISSISLSNSFFPHSFMFV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,919
Number of Sequences: 5004
Number of extensions: 63535
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)