Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l07
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    31   0.98 
06_01_0894 + 6853797-6853971,6855078-6855295,6856353-6856385,685...    29   3.0  
04_03_0653 - 18429736-18431379                                         29   5.2  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    29   5.2  
05_04_0094 + 17888998-17889589,17889668-17889795,17889879-178901...    28   6.9  
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312...    28   6.9  
07_03_1588 + 27942415-27942434,27942561-27942629,27942743-27943550     28   9.1  
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127     28   9.1  

>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 179 VVPNTPGCLRNQRS--QRQQPALPSQLHVDPRVLWCPLTTIRYRNTYPQRVAAKTNRILS 352
           V+ N  G L N R+  + Q P   SQ   D RVL+C   T+ + +     +  +   +LS
Sbjct: 278 VIINRTGILNNWRTSFKPQDPVQASQFQSDGRVLYCLELTMNFNHDEADIMEQEVGALLS 337

Query: 353 R 355
           R
Sbjct: 338 R 338


>06_01_0894 +
           6853797-6853971,6855078-6855295,6856353-6856385,
           6856776-6856856,6856857-6857069,6857184-6857381,
           6857456-6857593,6858528-6858644,6858970-6859104
          Length = 435

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 448 RNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVGSMNVGFSSG 627
           RN+  F+  L T S        N DGTP  S++  +  + +LL  F  +V  +++  +S 
Sbjct: 45  RNAA-FLAPLRTSSAVCTKAVSNSDGTPGTSSSPHVVCFGELLIDFVPTVNGVSLAEASA 103

Query: 628 Y 630
           +
Sbjct: 104 F 104


>04_03_0653 - 18429736-18431379
          Length = 547

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 272 VPWDPHEVAREVLVVDAESVGFEGTRAYLG 183
           +PW P E AR   + +   VGF  TR  +G
Sbjct: 428 IPWPPAESARHERLAELAVVGFAETRGQVG 457


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 128 ANKRVTHKGMKSGYTALVVPNTPGCLR 208
           + KR   +G+ S YTA  +PNT G LR
Sbjct: 732 SEKRPPFQGIPSNYTAFGMPNTSGHLR 758


>05_04_0094 +
           17888998-17889589,17889668-17889795,17889879-17890139,
           17890241-17890503,17890588-17890909
          Length = 521

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 179 VVPNTPGCLRNQRSQ--RQQPALPSQLHVDPRVLWCPLTTIRYRNTYPQRVAAKTNRILS 352
           V+ N  G L N RS    Q P   SQ   D +VL+C   T  +       +  + N +LS
Sbjct: 275 VIINRTGILNNWRSSFNPQDPVRSSQFESDGKVLFCLEMTKNFNPDEADVMEQEVNTLLS 334

Query: 353 R 355
           +
Sbjct: 335 Q 335


>03_05_0388 +
           23726957-23727418,23730016-23730262,23731072-23731220,
           23731313-23731597,23731665-23731889,23734251-23734445
          Length = 520

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +1

Query: 439 ENLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLF 558
           +N+    P+++Q+S  S + + +Y+ E   PY+  +   +
Sbjct: 44  DNVEEGNPYIQQVSLYSEEPENQYNEEPSNPYQEESDNAY 83


>07_03_1588 + 27942415-27942434,27942561-27942629,27942743-27943550
          Length = 298

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 257 VDPRVLWCPLTTIRYRNTYPQRVAAKTNRILSRKL 361
           + P  +W P+  + +   YP R A    RI+   +
Sbjct: 211 ISPNYIWTPMAAVAFARWYPSRSADDHRRIVENDI 245


>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
          Length = 649

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/68 (22%), Positives = 26/68 (38%)
 Frame = +2

Query: 101 TYFFNSRVEANKRVTHKGMKSGYTALVVPNTPGCLRNQRSQRQQPALPSQLHVDPRVLWC 280
           T   N+R +      H  +K GY ++  P       +  +   +   P  + +  R  WC
Sbjct: 316 TQMMNTRDKQGNTPLHLAIKLGYASMAFPLMLDARVSLNATNNEGLTPLDVAIYKRDQWC 375

Query: 281 PLTTIRYR 304
            L+T   R
Sbjct: 376 TLSTFNPR 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,931,336
Number of Sequences: 37544
Number of extensions: 405760
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)