Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l04
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.45 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   1.8  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   5.6  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   7.3  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.3  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   9.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.7  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.7  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   9.7  

>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 170 LGGVFRFFDRYR*PEEPEKH-SCCEDGS--CAW 259
           +G V R +D  R P +PE+  +CC+ G   C W
Sbjct: 42  IGNVSRIYDGIRVPPKPEEPLNCCQSGCAICVW 74


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 13  VNVIVTPKFNVPFCRISIIFYINLS 87
           V+V+    FN+PF  I I FYI  S
Sbjct: 482 VSVVKRVAFNIPFLLICIFFYIQSS 506


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 199 SIKESKYSSQVTNGNS-LRSASTPGGYS 119
           S++ S+++SQVTNG + L      GG+S
Sbjct: 179 SVRASRFTSQVTNGKAELLHIPVVGGHS 206


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 537 EPSSPRPSDVRNLCN 493
           E S+P P++V+N+CN
Sbjct: 529 EYSTPNPAEVQNICN 543


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 312 HGGCRTPFPTEYRRSLCNQAQLPSS 238
           +G   TPF T Y    CN   LP +
Sbjct: 371 YGNTNTPFNTAYESFGCNHTVLPEA 395


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 351 YVLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGFEIS 491
           ++ +SE V    P  R+ AIR  A +V +   I  I  +  G F IS
Sbjct: 297 FLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGIS 343


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 521  DQAMCVIYVTGYFEAPFCEVSNEYN 447
            D+    ++VT    +P+ EVS +YN
Sbjct: 1553 DEGYSPVFVTPPTNSPYAEVSGDYN 1577


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 224 KHSCCEDGSCAWLQSERRYSVGKGVLHPPCCH 319
           KH+CC D     +Q ++R ++      PP CH
Sbjct: 894 KHACCGDCLSEHIQYQKRRNI-----IPPLCH 920


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 64  IIFYINLSFKAWRWLKKRTNTPREWKRIVGYCHS 165
           ++ ++ LSF    W+   T+ PR W+    Y H+
Sbjct: 256 LVLWLFLSFLLALWIYYLTDIPRLWQMREFYIHA 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,780
Number of Sequences: 5004
Number of extensions: 48450
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)