Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25l04
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    29   2.9  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       29   2.9  
AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    27   6.7  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      27   6.7  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    27   6.7  
AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC006792-2|AAF60742.3|  406|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    27   8.9  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    27   8.9  

>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +3

Query: 135 VEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT--- 305
           V  + R  P +T        ++ AD+     TAAAR  A + +  NG+ +   E++    
Sbjct: 328 VSVEVRAPPRITTRPTTKVAVETADVELECGTAAARPEARVNWYKNGEAIIGSEYFVIEP 387

Query: 306 RRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAI 410
            R  I  +V      Y  ++E  V  +  S +L +
Sbjct: 388 NRLRILGVVRADQAIYQCIAENDVGSEQASAQLLV 422


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +3

Query: 135 VEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT--- 305
           V  + R  P +T        ++ AD+     TAAAR  A + +  NG+ +   E++    
Sbjct: 328 VSVEVRAPPRITTRPTTKVAVETADVELECGTAAARPEARVNWYKNGEAIIGSEYFVIEP 387

Query: 306 RRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAI 410
            R  I  +V      Y  ++E  V  +  S +L +
Sbjct: 388 NRLRILGVVRADQAIYQCIAENDVGSEQASAQLLV 422


>AF036693-2|AAO61430.1|  113|Caenorhabditis elegans Hypothetical
           protein C49A9.10 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 203 R*PEEPEKHSCCEDG--SCAWL 262
           R P EPE   CC++G  SC WL
Sbjct: 26  RPPMEPEPGLCCQEGCESCVWL 47


>Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical
           protein F53A2.9 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/59 (32%), Positives = 21/59 (35%)
 Frame = -2

Query: 267 LCNQAQLPSSQQLCFSGSSGQRYLSKNLNTPPKSRMAIAYDPLPLPGGIRSFFQPSPCF 91
           L    Q PS Q       SG RY   +L T  K R+       P P  I     P P F
Sbjct: 311 LMETTQWPSQQMHMMDALSGLRYQIVDLKTDVKLRILEKQKEFPKPAQIFQITGPRPGF 369


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 165 VTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFY 302
           +TW+E  D + D  D    R+    R V  + +  N D   E E+Y
Sbjct: 431 LTWKEVHDMVADCIDTIKARTKLDRRAVTTIHHSPNNDQY-ESEYY 475


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 132 GVEADRRLL---PFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKE 296
           G+ A R +L   PF   EE L  L +    +N   + AAR++  L    N   L+ K+
Sbjct: 440 GINAIREILSNCPFAATEELLRDLSEYKTYKNKNVSMAARSLITLFRAVNPKLLARKD 497


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 132 GVEADRRLL---PFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKE 296
           G+ A R +L   PF   EE L  L +    +N   + AAR++  L    N   L+ K+
Sbjct: 440 GINAIREILSNCPFAATEELLRDLSEYKTYKNKNVSMAARSLITLFRAVNPKLLARKD 497


>AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical
           protein R155.4 protein.
          Length = 873

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 386 IIDNYTFANQHVGFNSWIHDLIYDSTAGVELLFRQSIAVRSVTKRSYRPRSSCASQVPQV 207
           +ID +T        NSW++D + +  +  E+L    +A     K   R   S A+++ Q+
Sbjct: 332 LIDGHTDITVIFAENSWLNDAVDELCSSCEILGSLGVATDQAAKEIMR-IGSLATKLSQL 390

Query: 206 SDI 198
           S I
Sbjct: 391 SAI 393


>AC006792-2|AAF60742.3|  406|Caenorhabditis elegans Hypothetical
           protein Y50C1A.2 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 327 IVYPTVKAYVLVSEGVVIDDPFSRELAIR 413
           ++Y T  A V  SEG+V + PF   LA+R
Sbjct: 318 VIYHTSNAAVFNSEGLVDEIPFVATLAVR 346


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -3

Query: 335 IHDLIYDSTAGVE-LLFRQS 279
           IHD+IY  TAG+E  LFRQ+
Sbjct: 373 IHDVIYSFTAGLEQKLFRQA 392


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -3

Query: 335 IHDLIYDSTAGVE-LLFRQS 279
           IHD+IY  TAG+E  LFRQ+
Sbjct: 530 IHDVIYSFTAGLEQKLFRQA 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,561
Number of Sequences: 27780
Number of extensions: 276042
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)