Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25l03
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 100 2e-22
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 52 8e-08
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 51 2e-07
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 49 8e-07
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 46 6e-06
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 37 0.003
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 30 0.39
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 6.3
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 8.4
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 100 bits (240), Expect = 2e-22
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 12/198 (6%)
Frame = +2
Query: 167 SKQLVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQG---------R 319
+K + YSE+G+P V++ VP +V VR LA+P+NP+DIN IQG
Sbjct: 21 AKAIAYSEYGNPKEVLRAVSYNVPKCSKNQVNVRFLASPINPSDINQIQGVYPSKPPFTN 80
Query: 320 NYCLPSLPSIPGDEGVGEVLEIGSHVCAC-EPGDRVVLTSRLLGTWRYYGVFHERD-VHI 493
+ C ++ G+EG+ EV+++G PG +L S LG+WR R V +
Sbjct: 81 DVCSSKPSAVAGNEGLVEVVDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPV 140
Query: 494 ISPNIP-LPEASMLTIAPCMAYRMIKDFRNVQPXQTVIQNAANSPCGQCIVQLCKAWGIN 670
P + EA+ L++ PC AY +++ + IQ+ ANS G +QL K +G
Sbjct: 141 DKSAFPSIAEAATLSVNPCTAYCLLQHVVQLNKGDWFIQDGANSMVGIATIQLAKHFGYK 200
Query: 671 TFNIVANHYKYKVVKDYL 724
+ N+V N + +K+ L
Sbjct: 201 SINVVRNRPDIEKLKEQL 218
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 52.0 bits (119), Expect = 8e-08
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 1/182 (0%)
Frame = +2
Query: 167 SKQLVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGRNYCLPSLPS 346
S LV P V++ ++P ++++ A +N D G Y P LP
Sbjct: 2 SNLLVQVSKTGPSSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGL-YTAP-LPY 59
Query: 347 IPGDEGVGEVLEIGSHVCA-CEPGDRVVLTSRLLGTWRYYGVFHERDVHIISPNIPLPEA 523
IPG E G V +G V A + GDRVV + G + Y V +S IPL A
Sbjct: 60 IPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPF-GAYAQYTNVPTTLVSKVSEKIPLKIA 118
Query: 524 SMLTIAPCMAYRMIKDFRNVQPXQTVIQNAANSPCGQCIVQLCKAWGINTFNIVANHYKY 703
S + AY +I++ V+ TV+ +AA G + Q+ +A ++ + K
Sbjct: 119 SAALLQGLTAYTLIEEAYPVKTGDTVVVHAAAGGVGLLLCQMLRARNVHVIATASTAAKR 178
Query: 704 KV 709
++
Sbjct: 179 RI 180
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 50.8 bits (116), Expect = 2e-07
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Frame = +2
Query: 164 TSKQLVYSEFGDPLHVVKYRE-CQVP---PLGSQEVLVRMLAAPVNPAD---INTIQGRN 322
T +Y+ G P V+ + +P LG +VLV ++A +NP D +NT Q
Sbjct: 11 TKSAWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIA 70
Query: 323 YCLPSLPSIPGDEGVGEVLEIGSHVCACEPGDRV------VLTSRLLGTWRYYGVFHERD 484
L LP+IPG + G VL +GS V RV R G+ + V ++D
Sbjct: 71 KALFKLPNIPGYDFAGRVLAVGSEVKEFSATQRVWGCQSFPRAGRQGGSCATHIVTGDKD 130
Query: 485 VHIISPNIPLPEASMLTIAPCMAYRMIKDFRNVQPXQTVIQNAANSPCGQCIVQLCKA 658
V + + E + IA A+ ++ V+P ++ A+ G V L KA
Sbjct: 131 VWHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAKA 188
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 48.8 bits (111), Expect = 8e-07
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +2
Query: 161 LTSKQL--VYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGRNYCLP 334
+ KQL V+ G P +V K+ E V G EVLV + V D++ +QG ++ LP
Sbjct: 3 IPDKQLAAVFHTHGGPENV-KFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQG-DWPLP 60
Query: 335 S-LPSIPGDEGVGEVLEIGSHVCACEPGDRV 424
+ +P I G EG G V+++G+ V + GDRV
Sbjct: 61 AKMPLIGGHEGAGVVVKVGAGVTRLKIGDRV 91
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 46.0 bits (104), Expect = 6e-06
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +2
Query: 212 VKYRECQVPP-LGSQEVLVRMLAAPVNPADINTIQGRNYCLP-SLPSIPGDEGVGEVLEI 385
+K E +VP L EVLV++ AA +N D+ +G Y LP LP +PG +G G + ++
Sbjct: 17 LKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGL-YPLPLQLPVVPGSDGAGIIEKV 75
Query: 386 GSHVCACEPGDRVV 427
G V E GD VV
Sbjct: 76 GEDVEGFEKGDSVV 89
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 36.7 bits (81), Expect = 0.003
Identities = 29/92 (31%), Positives = 43/92 (46%)
Frame = +2
Query: 155 RNLTSKQLVYSEFGDPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGRNYCLP 334
+ +T K V +PL + + QV P + EV V++ + V D T+ G +
Sbjct: 6 KTITCKAAVAWGAKEPLSI---EDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDP-EG 61
Query: 335 SLPSIPGDEGVGEVLEIGSHVCACEPGDRVVL 430
+ P + G EG G V IG V PGD V+L
Sbjct: 62 AFPIVLGHEGAGIVESIGEGVINVRPGDHVIL 93
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 341 PSIPGDEGVGEVLEIGSHVCACEPGDRVVL 430
P I G E G V+E+G V + +PGD V +
Sbjct: 62 PMILGHESAGVVVEVGKGVSSLKPGDPVAV 91
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 303 FMSAGLTGAASMRTNTSWLPSGGTWHSLYFTTCNG 199
FM+ G + + R N SWL W T G
Sbjct: 357 FMNFGTSSDSFFRDNLSWLSKANNWSKFTATAALG 391
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 632 QCIVQLCKAWGINTFNIVANHYKY 703
QCI QL G FNIV ++ KY
Sbjct: 342 QCIEQLFSWLGARLFNIVISNKKY 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,996
Number of Sequences: 5004
Number of extensions: 68750
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -