Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25l01
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 28 1.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 2.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.1
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 3.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 4.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 4.9
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 6.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.6
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 8.6
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -3
Query: 463 QNLRRLLLEHGGQLFNVFLLFGGHFVDNLFQFIYVYIVDIRNAFEQLSRLLLGSFHFIYY 284
+++ RLL H F V++ G FV +F F+Y + + + L+ + + YY
Sbjct: 78 RDVERLLGSHRFASFCVYMFILGMFVTPIFSFLYSLLFKNLDYIQPGPTFLIFAILYQYY 137
Query: 283 FSLELT 266
+ + T
Sbjct: 138 YIVPST 143
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 359 LYC*YPERLRTTFAPSPRKLSLHLLF 282
L+C +P+ L T+ + +P+KLSL F
Sbjct: 65 LFCTHPDTLPTSLSINPKKLSLSFSF 90
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 359 DINKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK*P 520
D+NK +V+NK+ A K + E+ +L K K L +L S +AA E + P
Sbjct: 702 DLNKCSKVMNKLRASTK--LAEV-LVLRKDTSKKLISLSLKKSLVEAAKENRMP 752
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 371 LKEVINKMAAEQKKNVEELTTMLEKQ 448
LKE+ K+ +Q+KN E++ T+ +K+
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKK 267
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 317 ARKLFEGVPDINNID--INKLKEVINKMA--AEQKKNVEELTTMLEKQPPKVLDALQAGA 484
+R E + D + +N+L+++ K A ++ K+ E L +L K+P +A+Q
Sbjct: 79 SRPTLENLQDRRELQEQLNELRKLSRKSAFKSQAKRETELLDEILPKEPAGSKEAMQQKK 138
Query: 485 SAFKAALE 508
+AAL+
Sbjct: 139 KEKRAALK 146
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 394 HFVDNLFQFIYVYIVDIRNAFEQ 326
HF+ ++F FIY +V + N F +
Sbjct: 604 HFIFSVFTFIYFSLVPLNNLFHR 626
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 281 KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQPPKV 460
K +DE+ E K +KL+ G + +L++ +M E+ + + ++ +V
Sbjct: 316 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEV 375
Query: 461 LD-ALQAGASAF 493
D L+A SAF
Sbjct: 376 DDERLKAEFSAF 387
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 377 EVINKM-AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 514
+VI+K+ AA K+N E + +E + LDA +AG F L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 372 NLFMSILLISGTPSNNFRAFSSEAFTSSII 283
NLF S+L T + N R F A TSS I
Sbjct: 3774 NLFDSLLSSIETATKNMRTFKELAETSSFI 3803
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 377 LSIYLCLYC*YPERLRTTFAP 315
L +Y YC Y +RT FAP
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAP 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,812
Number of Sequences: 5004
Number of extensions: 41764
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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