Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25k12
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   4.6  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   4.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.1  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.1  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   8.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.0  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 255 RLKNELDRLEEENNMLRLKFEILLDMMTDKTVEAEQAE 368
           + K E  +LEE+    R K+E  L+   D+ V+ ++ E
Sbjct: 159 KAKKEESKLEEDLRNARAKYEESLEEFEDRMVQLKELE 196


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 197 LLQKILQNLPILS--LTDQYLVTVPLRHNHCR 108
           L Q  LQ L ILS  +TD Y+  V   H HC+
Sbjct: 239 LEQSTLQLLGILSGGMTDDYVSWVAENHAHCQ 270


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 462 LYLFRYFTENVFTISTFYSSVLNLTNFEN 376
           L +FR F + +FT+  F+   L L N  N
Sbjct: 447 LNIFRIFEKMIFTLQHFHEDFLRLQNSFN 475


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 468 LLLYLFRYFTENVFTISTFYSSVLNL 391
           +LLY F YF EN+  +    S  L L
Sbjct: 440 ILLYFFTYFPENILKLKIDTSIFLRL 465


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 261 SIANSPYELHPLFLKQPGIHCPSSKD 184
           SI N PY+     LK PGIH   S++
Sbjct: 69  SIGNFPYKEFDPVLKFPGIHYTYSRE 94


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 170 GDFEVSFEEGQWIPGCFRKSGCSS*GEFAIEKRTRQARRRKQHAKIEIR 316
           G+ EV+F  G  +      +  S   E  IEK  R+A  RKQ  K E+R
Sbjct: 449 GEMEVTFTSGFDVDN---NANSSEKDETTIEKYKRKAAERKQRRK-ELR 493


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 83   DTSVLKNELGSDYASKELSLDIGPLK----IKLGDFEVSFEEGQWIP 211
            DT     E  + +  +  S+D+  +K    + + DF+VS E   W P
Sbjct: 2429 DTDAKSRERFTHWLMQNASVDLPEIKDFEHVSILDFDVSLETQSWYP 2475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,607
Number of Sequences: 5004
Number of extensions: 30133
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)