Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25k12
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 31 0.65
07_01_0928 + 7795586-7795615,7795716-7795873,7796151-7796212,779... 31 0.65
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 30 0.86
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 1.1
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 29 1.5
09_06_0122 + 20990754-20991263,20992635-20992748 29 2.6
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 29 2.6
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 28 3.5
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 27 6.0
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48... 27 8.0
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 27 8.0
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775... 27 8.0
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762... 27 8.0
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 27 8.0
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 30.7 bits (66), Expect = 0.65
Identities = 23/97 (23%), Positives = 40/97 (41%)
Frame = -3
Query: 348 LFCQSSCPTVFRISILACCFLLRACLVRFSIANSPYELHPLFLKQPGIHCPSSKDTSKSP 169
L C + C T + AC ++ A ++R + S + P L PG H S
Sbjct: 68 LLCFTYCRTFLHYAPHACGGVVAATIIRVDLLMSQHR--PFHLDAPGCHYLGCVALGPSL 125
Query: 168 NFIFNGPISSDSSFEA*SLPSSFFKTDVSCLLTGIVF 58
+ ++ + +PS+ F TD+ +T +VF
Sbjct: 126 ELLLL--LARLHGLDVLLIPSAVFLTDIDVSITFVVF 160
>07_01_0928 +
7795586-7795615,7795716-7795873,7796151-7796212,
7799021-7799081,7799767-7799911
Length = 151
Score = 30.7 bits (66), Expect = 0.65
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -3
Query: 468 LLLYLFRYFTENVFTISTFYSSVLNLTNFENAEVQLVPLQLFCQSS 331
+L ++F+ EN+ Y+ +N+TN + + ++ FCQS+
Sbjct: 88 ILEFIFKIIKENLGEKRVLYAICINITNVRLSIMNIIDANAFCQSA 133
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 234 AAHKENLRLKNELDRLEEENNMLRLKFEILLDMMTDKTVEAEQ 362
A+H LKNEL+R++ N+ + K + L D T + EQ
Sbjct: 1203 ASHVHEAELKNELNRIKRSNSEYQRKIQSLEQENEDLTSQLEQ 1245
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 74 RRQDTSVLKNELGSDYASKELSLDIGPL 157
R+Q SVL ELG D++SK S D PL
Sbjct: 316 RKQLNSVLDAELGQDWSSKLTSFDYEPL 343
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 198 GSGFLVASGRAGAAHKENLRLKNELDRLEEENNMLRLKFEILLDMMTDKTVEAEQAE 368
GS LV + G AH+ +R + +D+L ++ LK +I+L +K+ EAE E
Sbjct: 328 GSRILVTTRNDGVAHRMKVRYLHRVDKLRRQDAWSLLKKQIVL----NKSDEAELDE 380
>09_06_0122 + 20990754-20991263,20992635-20992748
Length = 207
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 216 ASGRAGAAHKENLRLKNELDRLEEENNMLRLKFE 317
A RA + N L+ E+++L++EN MLR+K+E
Sbjct: 137 ARSRARKQARVN-NLETEVEQLKQENKMLRVKYE 169
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 270 VRFSIANSPYELHPLFLKQPGIHCPSSKDTSKSPNFIFNGPISSDS 133
V S+ + P ELH L +K+ GIH SS ++ NF+ + DS
Sbjct: 327 VLISVTHVP-ELHTLKVKEDGIHIGSSVRLAQLQNFLRKVILERDS 371
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 219 SGRAGAAHKENLRLKNELDRLEEENNMLRLK---FEILLDMMTDKTVEAEQAE 368
SG A E+LRLK E R E E N+ R K E +M+ D++ + E+A+
Sbjct: 652 SGVISAQQAEDLRLK-EKKRREREKNLPRKKRRRLEAEREMLEDESEDEEEAK 703
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 213 VASGRAGAAHKENLRLKNELDRLEEENNMLRLKFEILL 326
V G +EN RLKN L + + N L+++F L+
Sbjct: 154 VTKAEIGRLSEENKRLKNMLSNVTTKYNSLQMQFVTLM 191
>09_01_0028 +
486800-486890,486928-488009,488825-489190,489342-489692
Length = 629
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 29 MPLFSSKFN-PKTIPVRRQDTSVLKNELGSDYASKEL 136
M L S + + +P R+D S K++LGS+Y +++
Sbjct: 276 MKLMSELYGGARNVPYTRKDISNFKSKLGSEYRCRDI 312
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -3
Query: 441 TENVFTISTFYSSVLNLTNFENAEVQLVPLQLFCQSSCPTVFRISILACCFLLRA 277
T N+ +S ++S ++ +N + E +++ L ++C S C + S A F+LRA
Sbjct: 308 TWNMIPLSVLFNSTMDESNPRD-ENEILLLSVYCGSLCKYLTVASGRASVFVLRA 361
>06_01_0997 -
7752634-7753128,7753280-7753708,7754403-7755196,
7755247-7755574
Length = 681
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 29 MPLFSSKFN-PKTIPVRRQDTSVLKNELGSDYASKEL 136
M L S + + +P R+D S K++LGS+Y +++
Sbjct: 259 MQLMSELYGGARNVPYTRKDISNFKSKLGSEYRCRDI 295
>06_01_0982 +
7627420-7628141,7628190-7628643,7629167-7629823,
7629975-7630469
Length = 775
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 29 MPLFSSKFN-PKTIPVRRQDTSVLKNELGSDYASKEL 136
M L S + + +P R+D S K++LGS+Y +++
Sbjct: 277 MQLMSELYGGARNVPYTRKDISNFKSKLGSEYRCRDI 313
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 198 GSGFLVASGRAGAAHKENLRLKNELDRLEEENNMLR 305
G G R A E ++ E++R++EEN MLR
Sbjct: 189 GEGDDGGDSRTPMAQDELSEMQEEMERMKEENRMLR 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,558
Number of Sequences: 37544
Number of extensions: 169605
Number of successful extensions: 582
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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