Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25k08
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    29   0.86 
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        28   1.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   4.6  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   8.0  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    25   8.0  

>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = -2

Query: 508 QTFIMASDSPCRNTVSNYISSSTETKFVDIPYHLIILLFC 389
           Q+F++ +DSPC +T+   +++ T  + +D+   ++ +  C
Sbjct: 394 QSFVVRNDSPCGSTIGPKLAAMTGMRTLDLGNPMLSMHSC 433


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 419 NINKLRLC*RRNIIGYSVSAWRVRRHYERLT-EYK*SSLESFLNQIEISSWLCDAQSFCF 595
           +I  L+LC  R IIG+   +W+ ++    L    K S +      ++  +  C+ +S C+
Sbjct: 257 SIKTLKLCLYRRIIGFDPPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCY 316


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 490 SDSPCRNTVSNYISSSTETKFVDIPY 413
           +DSP + ++ NY+SSS   KF+   Y
Sbjct: 575 ADSPRKTSLRNYLSSSWRLKFMRSSY 600


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = -3

Query: 318 RFKFVVNFEISFTAFFIPRSIGKLISFDASFTSLNFVAKKSVTLSF 181
           ++ F++ ++ SF +F++P     L+S +++  + +   K S  L +
Sbjct: 188 KYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKLSKLLGY 233


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = -3

Query: 351 LYHFKSIWSN-FRFKFVVNFEISFTAFFIPRSIGKLISFDASFTSLN------FVAKKSV 193
           L +F S W+  F F    +++ +    FIPRSI +  SF  S   L+      F  K   
Sbjct: 229 LAYFWSYWTQAFDFGRAFDYKWTVNWRFIPRSIFESTSFSTSILFLHVALLVAFTCKHWN 288

Query: 192 TLSFRSVIVIINCVVT 145
            LS  +   ++N ++T
Sbjct: 289 KLSRATPFAMVNSMLT 304


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 59  IKILVLSVFINEII-SFPILDLIPEQFNDYVTTQFIITITDLK 184
           IK  VL   ++  +  FP L+ +P +F  Y   +   T+T  K
Sbjct: 4   IKTAVLGTGVSAFVFHFPFLEALPSKFEIYACLERRATVTQSK 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,085
Number of Sequences: 5004
Number of extensions: 53978
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)