Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25k08
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 401 SIILP*RLLIITKSTAGSITLNQFGQISVLSSWSILKYRLQLFLFH 264
           +I LP +L ++   TA    +   G  + L    +LK RL  +LFH
Sbjct: 206 NIELP-QLQLVKNYTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFH 250


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 185 DSVTDFFATKLS---EVNEASKLINLPIERGIKKAVNDISKLTTNLKR 319
           DSV+  F++  +    VNE  K +NL  E+  K +  ++ K   +LK+
Sbjct: 424 DSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKK 471


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 185 DSVTDFFATKLS---EVNEASKLINLPIERGIKKAVNDISKLTTNLKR 319
           DSV+  F++  +    VNE  K +NL  E+  K +  ++ K   +LK+
Sbjct: 424 DSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKK 471


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 250 VDKFRRFIYFT*FCSKEICYAVL*VCY 170
           +DK  R ++   F    ICY V+ V Y
Sbjct: 468 IDKVARIVFPASFGLLNICYWVIYVTY 494


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 548 DLKMIQVMITCILSDVHNGV 489
           D+KM +V+I   +S V+NGV
Sbjct: 485 DIKMQKVLIDFWVSFVNNGV 504


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 548 DLKMIQVMITCILSDVHNGV 489
           D+KM +V+I   +S V+NGV
Sbjct: 485 DIKMQKVLIDFWVSFVNNGV 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,073
Number of Sequences: 438
Number of extensions: 3981
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)