Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25k03
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.73 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.7  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    26   3.9  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   5.1  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.8  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   9.0  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 341 DASAVEKG*QLSGPLV*KMELVIGRKETNVSGGGRHPSRGRFDPGAGQRDGNHQGTQAG 517
           + S V     L+G ++ +  L +  K TNV G  R   RGR   G G+  G ++G   G
Sbjct: 105 EPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGR-GRGRGRGRGGYRGRARG 162


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 449  PSRGRFDPGAGQRDGNHQGTQAGPR 523
            PSRG    G G   G+H+G+Q G R
Sbjct: 927  PSRGVSHHGHGGMSGSHRGSQRGSR 951


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 197 LLL*VQSQRVRNCRCKIIYKNIHVCFKQIIAKSGI 93
           LL+  Q + +R  R    YK I  CFK+  A+ G+
Sbjct: 53  LLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGV 87


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 441 PPPLTFVSFRPITSSIFQTKGPDNCQPFSTALAS 340
           PPP   +  +P++SS   +K P + Q FS A +S
Sbjct: 199 PPPRIVLGSKPVSSSTLPSK-PKSFQVFSDASSS 231


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 96  SALRNNLFKTNVNIFINYFASTISHSLALYLQ*QYCDYQTKVLEHHPQYNLDNFLIDRLK 275
           S L   LF+   N++ +  AS++ ++L       + +YQT  L   P  +   F+ D L 
Sbjct: 155 STLGKKLFQIE-NVYDSSLASSVINALGKKSNRIFYNYQTGYLSKMPAASAPEFIQDTLT 213

Query: 276 SL 281
            L
Sbjct: 214 KL 215


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 395 SFKPKGPTIVNLFPLRSHLERF 330
           S+K K P+IV  FPL + L R+
Sbjct: 177 SYKEKRPSIVEKFPLHNLLSRW 198


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 307 AFGSLAIS*RDFSRSIRKLSKLYCGWCSNTFVW 209
           AFG L +S  DF +S   L KL   +   TF+W
Sbjct: 436 AFGRLFLSRNDFPKSEWSLGKLSKPFQLITFLW 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,838
Number of Sequences: 5004
Number of extensions: 57668
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)