Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25k03
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254... 30 1.3
04_01_0362 - 4742441-4743840,4743854-4744127 30 1.3
08_01_0681 - 5969645-5969950 30 1.7
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 3.0
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 29 4.0
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 5.3
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 28 5.3
01_06_0241 - 27813076-27813622,27813695-27814125 28 5.3
11_04_0201 - 14768341-14768524,14768720-14768838 27 9.2
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749... 27 9.2
01_05_0624 + 23772613-23774671,23774737-23775596 27 9.2
>05_07_0010 -
27024013-27024171,27024286-27024699,27025389-27025445,
27025544-27025637,27025775-27025868,27025949-27026117,
27026450-27026554,27026665-27026784,27027190-27027735
Length = 585
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 444 RPPPLTFVSFRPITSSIFQTKGPDNCQPFSTALASGTLRCSDRILMLLVP 295
RPP T SFRP+T+ + G + L + C D I +P
Sbjct: 26 RPPATTAASFRPVTAELGGELGRQLVEAVGVGLPCTVMACGDVIYRSTLP 75
>04_01_0362 - 4742441-4743840,4743854-4744127
Length = 557
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 258 LIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKKVDNCRALWFERWSWLLDERKQTLAE 437
L L++L D+ + + D A + R +W++ D R W+W D+ LA
Sbjct: 174 LYAELEALADLEQSARKLPTDEARRALEQRTRWRRHDARRLRDSSLWNWTYDKAVLLLAR 233
Query: 438 A 440
A
Sbjct: 234 A 234
>08_01_0681 - 5969645-5969950
Length = 101
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 431 SGGGRHPSRGRFDPGAGQRDGNHQGTQAGPRHD 529
SGGGR G D G RDG+ +G G D
Sbjct: 54 SGGGRDDDGGDRDDDGGDRDGDEEGGDDGDGDD 86
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 335 VPDASAVEKG*QLSGPLV*KM---ELVIGRKETNVSGGGRHPSRGRFDPGAGQRDGNHQG 505
+P + G Q+S P V +M + GRK+ + R P R D Q G H G
Sbjct: 456 LPPENLHGNGPQVSSPSVRRMFGSSSLTGRKDERIDHQVRLPLRMAEDEDTFQ--GMHDG 513
Query: 506 TQAGPRHDYRTHRLARY 556
+ +H YR L R+
Sbjct: 514 MERDVQHSYRGDALTRH 530
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 398 ELVIGRKETNVSGGGRHPSRGRFDPGAGQRDGNHQGTQAGPRHD 529
++V K N +GG H + GR P G++ G H G ++ P D
Sbjct: 577 DVVSTEKHKNPTGGP-HQNFGRPQPADGKKLGKHNGHRSAPLLD 619
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 141 INYFASTISHSLALYLQ*QYCDYQTKVLE 227
+NY S + +A Y Q +CD+ K++E
Sbjct: 63 VNYLKSGLPSRIAFYKQGAWCDFPQKIME 91
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = -1
Query: 468 SKRPRDGWRPPPLTFVSFRPITSSIFQTKGPDNCQPFSTALASGTLRCSDRILMLLVP*P 289
S+R R WR PL V ++SS PD+ + A G R+ M P P
Sbjct: 80 SRRWRPLWRSTPLVLVDAHLLSSSSAAPGAPDDSSKKAREAARGVTHAVSRV-MGAHPGP 138
Query: 288 YLRETLVGR-LESYPNCIVDGVLILSF-GSRNIVIVS 184
+ L +E + + + + +L+ G + +V+V+
Sbjct: 139 FRCVHLTSSCMEEFQGMLANWLQVLAMKGIQELVLVN 175
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 449 PSRGRFDPGAGQRDGNHQGTQAGPRHDYRTHRLARY*AGVQ 571
P+R F+ G + + NH+ H R+HR A A V+
Sbjct: 12 PARFGFEEGRVEPEANHESANQQSHHSNRSHRTASRNAEVE 52
>11_04_0201 - 14768341-14768524,14768720-14768838
Length = 100
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +1
Query: 169 TRWLCTYNN-NIATTKRKY*NTIHNTIWITF*STD*SLSKIWLRNQKHQNSIRTPKRSRC 345
TR CT + TT K+ +T+ + W T S +N + + S + +
Sbjct: 24 TRADCTVERMTLVTTVMKHNDTVEESWWSTVASNH--------QNTEGRRSAAAMRTATR 75
Query: 346 ERSGKRLTIVGPFGLKDGAGYWTKG 420
+R KR VG G G+W +G
Sbjct: 76 QRDAKREEDVGDHAGVGGGGHWPRG 100
>02_03_0345 +
17973509-17974131,17974207-17974537,17974624-17974985,
17975314-17975572
Length = 524
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 228 VLILSFGSRNIVIVSTKPASEK 163
V+ L FGSR + +VS+ PA+E+
Sbjct: 73 VMGLRFGSRRVAVVSSAPAAEE 94
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 123 TNVNIFINYFASTISHSLALYLQ*QYCDYQTKVLEHHPQYNLDNFLIDRLKSL 281
T++N+ F + H L Q+ D +++ +H P + D + RL SL
Sbjct: 160 THLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYDHPPMHTADISWLARLPSL 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,508,158
Number of Sequences: 37544
Number of extensions: 379830
Number of successful extensions: 1242
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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