Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25k03
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-7|AAB52429.1|  241|Caenorhabditis elegans Hypothetical pr...    32   0.29 
AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine re...    30   1.2  
AL110485-18|CAB60366.1|  108|Caenorhabditis elegans Hypothetical...    30   1.6  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    28   4.8  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   8.3  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   8.3  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF101310-2|AAC69215.1|  299|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   8.3  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   8.3  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   8.3  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   8.3  

>U97191-7|AAB52429.1|  241|Caenorhabditis elegans Hypothetical
           protein F53F10.1 protein.
          Length = 241

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 333 AFQMRAQWKKVDNCRALWFERWSWLLDERKQTLAEADAIR 452
           A QM    +   +C A W  RWS + DER +   EA+ +R
Sbjct: 54  AAQMEKTMRWWSSCTADWRNRWSAVRDERNRAREEAETLR 93


>AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 1 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 78  IIFYCYSALRNNLFKTNVNIFINYFASTISHSLALYL 188
           II+YC+ +   N +  N+ IF+  F+  I+    LYL
Sbjct: 169 IIYYCWMSSTGNRYMLNLPIFVIVFSQLITIPALLYL 205


>AL110485-18|CAB60366.1|  108|Caenorhabditis elegans Hypothetical
           protein Y46G5A.23 protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 434 GGGRHPSRGRFDPGAGQRDGNHQGTQAG 517
           GGGR   RG    G G R G H+G   G
Sbjct: 70  GGGRRHHRGHRHGGGGHRHGGHRGGGGG 97


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 411 DERKQTLAEADAIRREAASTLAQVKETETTKALKPVPVTTTG 536
           +E+++ LAE  A   +     A+ K+ +T +A +PV  T TG
Sbjct: 29  EEKQKKLAEKKAAASDKPVKEAKAKKEQTVEAAEPVDQTPTG 70


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 45  VLYIVQYFC-LAIIFYCYSALRNNLFKTNVNIFINYFASTISHSLAL 182
           +L++  YF    +I  C++ L  + ++TN   +I+Y  STI +  A+
Sbjct: 114 LLFVAFYFAPFPVIERCFATLYMHDYETNKRRWISYLLSTILYIFAI 160


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 225 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 362
           E+HP ++   FL+ R   L +  K+   SK+D   +     A+ KK
Sbjct: 808 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 853


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 225 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 362
           E+HP ++   FL+ R   L +  K+   SK+D   +     A+ KK
Sbjct: 842 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 887


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 437 GGRHPSRGRFDPGAGQRDGNH-QGTQAGPRH 526
           GGRH   GR    +G   G H  G + GP H
Sbjct: 331 GGRHGGHGRHGSRSGSPGGRHGHGGRHGPPH 361


>AF101310-2|AAC69215.1|  299|Caenorhabditis elegans Hypothetical
           protein C39F7.1 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 456 RDGWRPPPLTFVSFRPITSSIFQTKGPDNCQPFST 352
           R+ W P P      RP TS +  + G DN    ST
Sbjct: 103 RNSWNPTPFDHYPSRPATSILTTSAGNDNSIYVST 137


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 225  EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 362
            E+HP ++   FL+ R   L +  K+   SK+D   +     A+ KK
Sbjct: 866  ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 911


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 225  EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 362
            E+HP ++   FL+ R   L +  K+   SK+D   +     A+ KK
Sbjct: 900  ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 945


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 225  EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 362
            E+HP ++   FL+ R   L +  K+   SK+D   +     A+ KK
Sbjct: 953  ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 998


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 225  EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 362
            E+HP ++   FL+ R   L +  K+   SK+D   +     A+ KK
Sbjct: 872  ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 917


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,128,976
Number of Sequences: 27780
Number of extensions: 332532
Number of successful extensions: 1095
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)