Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j23
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   1.8  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   2.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   2.3  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   4.1  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   4.1  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    24   7.1  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    24   7.1  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    24   9.4  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    24   9.4  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   9.4  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 PKLNRILLISVAFLCILVSFFTTWI 255
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 208 SVAFLCILVSFFTTWIFMRMKLPGYLQN*FVS 303
           S+ F  IL+   T  +    KLPGYL+N F S
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLFKS 322


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 150 NTRPHTQPDHTKTESNSPYLCGVPMYFSVILYHLDIHAYEVARIF 284
           +T+    P H  + S  P+   V ++F+ +   L +H Y+ + +F
Sbjct: 8   STKFQGHPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVF 52


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 129 TRRAWLHNTRP-HTQPDHTKTESNSPYLCGVPMYFSVI 239
           T +   +NT P + QP+ TK  +NSP     P+Y +V+
Sbjct: 148 TNQQQQNNTNPINNQPEDTKPNTNSP-----PVYHTVL 180


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 198 SPYLCGVPMYFSVILYHLDI 257
           +P  CG P YF VI + +D+
Sbjct: 421 NPTACGCPDYFKVIKHPMDL 440


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 331 SPKIKQYKISLQINSVNILATS 266
           SPKIK+ + +  +N  ++LATS
Sbjct: 19  SPKIKEQENTSTVNESDVLATS 40


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +3

Query: 63  LHAESC*WSVHHGRSCVELSLLTRRAW 143
           L    C W  H  R C E     R+ W
Sbjct: 32  LRLNDCYWDTHDWRKCTEQMEEFRKCW 58


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 181 PKLNRILLISVAFLCILVSFFTTWI 255
           P +  +L + ++ L + V FFT W+
Sbjct: 82  PNIYFLLRLLISVLAVSVVFFTAWV 106


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 181 PKLNRILLISVAFLCILVSFFTTWI 255
           P +  +L + ++ L + V FFT W+
Sbjct: 82  PNIYFLLRLLISVLAVSVVFFTAWV 106


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 46  HSRPVAFMPNRVNGQYIMEGLA 111
           HS PV F+P      Y+ +G A
Sbjct: 20  HSEPVNFVPKENAKSYVRQGFA 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,507
Number of Sequences: 5004
Number of extensions: 33866
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)