Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25j23
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0638 + 12493520-12494053 73 6e-14
11_01_0359 - 2731522-2732346 29 1.3
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897... 29 1.7
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 27 5.1
02_05_0499 - 29534462-29535315,29535871-29537221 27 5.1
12_02_0350 + 17826907-17827041,17828018-17828070,17828305-178284... 27 6.7
03_04_0162 + 17858802-17861168 27 6.7
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24... 26 8.9
06_03_0620 - 22803769-22804867,22804959-22805311 26 8.9
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 26 8.9
>02_02_0638 + 12493520-12494053
Length = 177
Score = 73.3 bits (172), Expect = 6e-14
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 1 IVEPPSVGSTTDEH-GHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPT 177
IVEPP +GS D G RPV F+P RVNGQYI+EGL+ I+LD +
Sbjct: 81 IVEPPGIGSVQDPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRN 140
Query: 178 TPKLNRILLISVAFLCILVSFFTTWIFMRMKLPGYL 285
P+ R+ I++++ +F+R+K+PGYL
Sbjct: 141 RPRSLRVSFGGSGVAAIVIAYAMAMLFLRIKIPGYL 176
>11_01_0359 - 2731522-2732346
Length = 274
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 166 HNPTTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 282
H P L R+L L+ AFL + + F W+ +R ++P +
Sbjct: 79 HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118
>06_01_1093 -
8970996-8971667,8971756-8971902,8971982-8972118,
8972343-8972612,8972731-8972868,8974965-8975394
Length = 597
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 184 KLNRILLISVAFLCILVSFFTTWIFMRMKLPGYLQN*--FVS*FCTVLFLGCSTNKF 348
KL ++LI F+ V+FFTT + K+ Y F+ FC V+ G +T KF
Sbjct: 176 KLEEVILIISIFI---VAFFTTLTKLHPKMKAYEYGFRVFLLTFCYVMVSGYNTGKF 229
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 184 KLNRILLISVAFLCILVSFFTTWIFMRMKLP 276
K N L I AF ++ F T +F+R K+P
Sbjct: 536 KRNSFLFIFKAFQLFVLGFITMTLFLRTKMP 566
>02_05_0499 - 29534462-29535315,29535871-29537221
Length = 734
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 335 LQPKNKTVQN*LTN*FCKYPGNFIRMNIQVVKNDTK 228
L P+N TV + + + Y G RM++ + KN++K
Sbjct: 220 LAPRNTTVDDGICFVWVDYNGTSRRMSVYIAKNESK 255
>12_02_0350 +
17826907-17827041,17828018-17828070,17828305-17828414,
17828629-17828796,17828898-17829155,17829295-17829395
Length = 274
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 211 VAFLCILVSFFTTWIFMRMKLPGYLQN*FVS*FCTVLFLGCSTN 342
V L I ++F+TTW F+R+ + G+ ++ V LG +T+
Sbjct: 64 VILLPIAITFYTTWWFIRV-VDGFFSPIYIHLGINVFGLGFATS 106
>03_04_0162 + 17858802-17861168
Length = 788
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 1 IVEPPSVGSTTDEHGHSR-PVAFMP 72
+V+PP G+ TD+ GH R +F+P
Sbjct: 59 LVDPPPHGAATDDDGHRRWHESFLP 83
>11_01_0031 +
248264-248513,248519-249007,249178-249445,249631-249718
Length = 364
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 162 HTQPDHTKTESNSPYLCGVPM 224
H PD T SN+P C PM
Sbjct: 174 HPAPDDPTTSSNAPTTCSPPM 194
>06_03_0620 - 22803769-22804867,22804959-22805311
Length = 483
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 262 RMKLPGYLQN*FVS*FCTVLFLGCSTN 342
+ KLPG +Q S CT L GCS N
Sbjct: 381 KSKLPGNIQYACASGDCTALGYGCSCN 407
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 177 HTKTESNSPYLCGVPMYFSVILYHLDIHAYEVARIFTELICKLILYCFIFG 329
H+ S PYL G P Y V + L + V + L+ +++ F+ G
Sbjct: 513 HSIGHSEQPYLYGFPYYRVVPIVSLAVLIGLVYAVVAPLLLPILVIYFLLG 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,873
Number of Sequences: 37544
Number of extensions: 213769
Number of successful extensions: 455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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