Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j23
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   0.93 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 144 LHNTRPHTQPDHTKTESNSPYLCGVPMYFS 233
           LH+  P    DH++ +  + YL   P  +S
Sbjct: 120 LHDNSPSFLSDHSRDQEQNLYLTPSPQMYS 149


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 169 NPTTPKLNRILLISVAFLCILVSFFTTWIFMRMK 270
           NP+   L  +L I   FL +L +    WIF   K
Sbjct: 44  NPSLHYLLALLYILFTFLALLGNGLVIWIFCAAK 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 13   PSVGSTTDEHGHSRPVAFMPNRVNGQY 93
            P VG  T+   HSR  +    R NG+Y
Sbjct: 1761 PPVGHPTNASAHSRSGSQSMPRQNGRY 1787


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 126 EEKARRKTFHDVLTINTIRHEGYRS 52
           E+K R+K+  DV  +   R + Y+S
Sbjct: 122 EQKRRKKSLDDVKILRNDRIDSYKS 146


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 224 HRNATEIRRIRFSFGVVGLCVRSSIMKPSPPSEKRKLDARPSMMY*PLT 78
           HRNA +   +     VV L     I++ S PS+K + +A+ S    P+T
Sbjct: 320 HRNA-DTHEMSEWVKVVFLYWLPCILRMSRPSDKEEREAQKSQKPSPVT 367


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 56  GLLCPCSSVVEPTLGGS 6
           GLL P  +++EPT G +
Sbjct: 93  GLLKPGCTIIEPTSGNT 109


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 192 SNSPYLCGVPMYFSVILYHL 251
           S+   LCG+ + F  + Y+L
Sbjct: 3   SSFEILCGIAVLFLALYYYL 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,668
Number of Sequences: 438
Number of extensions: 2282
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)