Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j19
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   0.97 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   1.3  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   1.3  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    26   1.3  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   1.7  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   3.0  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   3.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   3.9  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    24   6.8  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    23   9.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    23   9.0  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    23   9.0  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           23   9.0  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 138 DTGDWVGETVEEAPWWTGWFGL 73
           D   +V  T E APW   WFG+
Sbjct: 695 DPSKFVDRTPENAPWKPYWFGI 716


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 291 NTH*FQNHLSLVSVMSSSNGFLRIVATDGNGVFVGWISSWCRSSLQITLQDDTG 130
           NT     H+   ++++ +N ++R V        +G I+SW  S LQI   D+ G
Sbjct: 516 NTPLVMQHID--NLVTQANIYIREVGQQPCSRLLGQIASWITSMLQIFGLDENG 567


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 261 LVSVMSSSNGFL---RIVATDGNGVFVGWISSWCRSSLQIT 148
           L S M +S G      ++A  G G F  W++ W    +Q+T
Sbjct: 97  LCSSMPTSGGLYYAAAVLAPKGWGPFAAWLTGWSNYLVQVT 137


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 7   PNQGSYQTGQGFTGKPLNEKYEEPE 81
           PN   YQT QG  G P+++++ + +
Sbjct: 380 PNAMMYQTQQGRQGNPMHQQFSQQQ 404


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 162 SLQITLQDDTGDWVGETVEEAPWWTGWF 79
           SL +  +D T  W  +  + +P+W  WF
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWF 257


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +1

Query: 82  PTGPPRGFFYSFTYPVSSIVLKSDLQGG---SAPTRYPA 189
           P+G P  F  +   PVSSI     L G    ++P  YPA
Sbjct: 120 PSGVPPAFARTLLPPVSSIASPDILSGAPGIASPLGYPA 158


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 189 RQRHHFRRWLQFLRNRLRKT 248
           RQ+ H R W+ FL + LR++
Sbjct: 315 RQKLHLRAWVSFLGSALRES 334


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 168 RSSLQITLQD-DTGDWVGETVEEAPWWTGWFGLF 70
           +  L + L++ D G WVGE + E   +TG  G+F
Sbjct: 444 KGDLLLVLKEIDEGWWVGEKLGEDGVFTGNTGMF 477


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 264 SLVSVMSSSNGFLRIVATDGNGVF 193
           S+VS M  SNG+L +  +DGN +F
Sbjct: 91  SIVS-MKYSNGWLMLALSDGNLLF 113


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 35  KDSPESL*MKNTKSPNQPVHH 97
           K  P  L + + KSPN+  HH
Sbjct: 122 KKDPAKLLVSHNKSPNRNYHH 142


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 61  EKYEEPEPTGPPRGFFYSFTYP 126
           E    P P+ PP G  Y++TYP
Sbjct: 253 ESVPAPLPS-PPSGPIYTYTYP 273


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   IIQTKEATKPVKDSPESL*MKNTKSP 79
           I++ +E  +PV+ SPE    K T  P
Sbjct: 502 IVEEQEVEEPVETSPEEEAEKKTDEP 527


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 YPVSSIVLKSDLQGGSAPTRYPADKDTISV 210
           Y V  + +++ L   SAP+  PA++D  +V
Sbjct: 56  YNVEGVFMRNWLDEDSAPSGCPAERDWATV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,742
Number of Sequences: 5004
Number of extensions: 26702
Number of successful extensions: 67
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)