Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j19
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   1.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   2.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   2.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   2.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   2.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   6.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.9  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 141 PEE*SARRIGTN*ISSRQRHHFRRWLQFLRNRLRKT*H*LGLNDFEINEYF*NKSCVVK 317
           PEE   R   +    +R +  F         R ++    LGLN+ +I  +F NK   +K
Sbjct: 18  PEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIK 76


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 132 GDWVGETVEEAPWWTGW 82
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEPSPKTPWYKGW 214


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 132 GDWVGETVEEAPWWTGW 82
           GD + E   + PW+ GW
Sbjct: 125 GDNMLEVSSKMPWFKGW 141


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 132 GDWVGETVEEAPWWTGW 82
           GD + E   + PW+ GW
Sbjct: 141 GDNMLEVSSKMPWFKGW 157


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 52  PLNEKYEEPEPTGPPRGFFYSFTYPVS 132
           P+ EK    +P  PP+   Y F  PVS
Sbjct: 809 PVREKLSSSQPMQPPQQNPYMF-LPVS 834


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 132 GDWVGETVEEAPWWTGW 82
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEVSSKMPWFKGW 214


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 188 PTKTPFPSVATILK 229
           P +TP P V TIL+
Sbjct: 469 PPETPGPQVETILQ 482


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 82  PTGPPRGFFYSFTYPVSS 135
           P G P+GF   F   +SS
Sbjct: 628 PKGQPQGFPLQFLVVISS 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,051
Number of Sequences: 438
Number of extensions: 2003
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)