Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j15
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314...    28   2.7  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 27   4.8  
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    27   4.8  
09_02_0436 - 9391496-9391596,9391671-9391742,9392535-9392742,939...    27   8.3  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    27   8.3  

>04_04_0891 +
           29130494-29130904,29131043-29131102,29131203-29131409,
           29131520-29131645,29131767-29131823,29131946-29132014
          Length = 309

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 303 AAREPRVDSVVRARSWPRPSLHGALXAMLGRSCRS 407
           A ++P + + VR RSWP PS      + L R+ RS
Sbjct: 14  AVKKPLLAAAVRRRSWPPPSGRALPFSPLTRTPRS 48


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 88  TSFITVSICRSGR-----SICIQPYHVVVWWFM*FLF 183
           +SF T+ I  SG       +CI+P  V+V W + FLF
Sbjct: 374 SSFATMCIFTSGTLYAIGGVCIKPVLVLVLWILYFLF 410


>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 207 AQTFRLCGKQELHKPPHHHVI 145
           + +  LC +Q L +PPHH V+
Sbjct: 79  SSSLSLCHRQTLSRPPHHSVL 99


>09_02_0436 -
           9391496-9391596,9391671-9391742,9392535-9392742,
           9393413-9393707,9393782-9393916,9394624-9394898,
           9394976-9395149
          Length = 419

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 249 EPVLNTXRLLRNAHAQTFRLCGKQELHKPPHH 154
           +PV+    +++  H    R+ G Q+ HKP HH
Sbjct: 8   QPVIKICTVIQMIH---IRMIGLQQAHKPHHH 36


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 149 TWWCGGLCNSCLPHKRKVCACAFLSNLXVLSTGSVRSGHPGVXGIXMCG 295
           ++W G LC    P   K   C F+ NL + +  S  +  P V  +  CG
Sbjct: 561 SYW-GKLCFLSTPDGEK---CGFVKNLAITAIVSCLAREPSVDALVSCG 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,870
Number of Sequences: 37544
Number of extensions: 240821
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)