Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j15
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   0.82 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   0.82 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   0.82 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.3  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 394 RPSIAXRAPCKLGLGHDRALTTLSTRGSRAARAST 290
           +PS+    P ++ +G     ++  T GSRAA  +T
Sbjct: 271 KPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTT 305


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 394 RPSIAXRAPCKLGLGHDRALTTLSTRGSRAARAST 290
           +PS+    P ++ +G     ++  T GSRAA  +T
Sbjct: 271 KPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTT 305


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 394 RPSIAXRAPCKLGLGHDRALTTLSTRGSRAARAST 290
           +PS+    P ++ +G     ++  T GSRAA  +T
Sbjct: 271 KPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTT 305


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 61  RYISREKDSTSFITVSICRSGRSICIQPYHVVVWW 165
           +Y++ E    S +   +C     +CI  Y + +W+
Sbjct: 518 KYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWF 552


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 61  RYISREKDSTSFITVSICRSGRSICIQPYHVVVWW 165
           +Y++ E    S +   +C     +CI  Y + +W+
Sbjct: 571 KYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWF 605


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 64  YISREKDSTSFITVSICRSGRSICIQPYHVVVWWF 168
           +++R K  T  +TV I  +   IC  PY+V+  W+
Sbjct: 250 FLTRAKIRTLKMTVIII-AVFFICWTPYYVMSLWY 283


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 186 GKQELHKPPHHH 151
           G   +H  PHHH
Sbjct: 422 GHSHIHATPHHH 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,588
Number of Sequences: 438
Number of extensions: 2426
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)