Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j14
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068989-1|AAH68989.1|  422|Homo sapiens chromosome 14 open read...    35   0.34 
AK058044-1|BAB71637.1|  422|Homo sapiens protein ( Homo sapiens ...    35   0.34 
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    30   7.3  
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    30   7.3  

>BC068989-1|AAH68989.1|  422|Homo sapiens chromosome 14 open reading
           frame 50 protein.
          Length = 422

 Score = 34.7 bits (76), Expect = 0.34
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
 Frame = +3

Query: 339 KTVETDVVTVQDIKDLVLYTAPLKMLISAPATVNVLHLRATHRFLRALIFYCQYYLQTSD 518
           K  +   +T+ D+K + L       +    +    +  +    FL AL++Y  +YL+   
Sbjct: 109 KRGQQGTITLDDVKFVTLLLLQDTEMQRICSFTTFMRNKNLDNFLMALLYYLSHYLE--- 165

Query: 519 EMSKRSLELEAK---IRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMG 689
              K SLE + K   +      E+E +    LE  +  +A++YC L++G     K HHM 
Sbjct: 166 ---KNSLEKKPKSYMVGLVEKKEMELVLS-ELEAAQRYLAQKYCILVLGLAVPDK-HHMC 220

Query: 690 LSKKTRSLTK 719
             K+  S T+
Sbjct: 221 CGKEKISDTQ 230


>AK058044-1|BAB71637.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25315 fis, clone TST00114. ).
          Length = 422

 Score = 34.7 bits (76), Expect = 0.34
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
 Frame = +3

Query: 339 KTVETDVVTVQDIKDLVLYTAPLKMLISAPATVNVLHLRATHRFLRALIFYCQYYLQTSD 518
           K  +   +T+ D+K + L       +    +    +  +    FL AL++Y  +YL+   
Sbjct: 109 KRGQQGTITLDDVKFVTLLLLQDTEMQRICSFTTFMRNKNLDNFLMALLYYLSHYLE--- 165

Query: 519 EMSKRSLELEAK---IRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMG 689
              K SLE + K   +      E+E +    LE  +  +A++YC L++G     K HHM 
Sbjct: 166 ---KNSLEKKPKSYMVGLVEKKEMELVLS-ELEAAQRYLAQKYCILVLGLAVPDK-HHMC 220

Query: 690 LSKKTRSLTK 719
             K+  S T+
Sbjct: 221 CGKEKISDTQ 230


>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 555  IRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMGL 692
            +RT  +D +E    + +E +R  + +E  ++I  DG +  Y H+ L
Sbjct: 1355 VRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLAL 1400


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 555  IRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMGL 692
            +RT  +D +E    + +E +R  + +E  ++I  DG +  Y H+ L
Sbjct: 1355 VRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLAL 1400


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,270,687
Number of Sequences: 237096
Number of extensions: 1343542
Number of successful extensions: 6135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6133
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)