Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j12
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    29   0.64 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   1.5  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   4.5  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    26   4.5  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.9  

>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 267 DDHHISISNKM-VERLVEDATLANTASINTGSSKADYKEKMYMEKLRCM 410
           D +   I+N + +   + D+T ++ A  N   S A++KEK+    +RC+
Sbjct: 265 DSNRPGINNLINIFAAISDSTPSDIAQANASCSNAEFKEKVSSAIIRCL 313


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -3

Query: 323 CVFYQTFNHFVRYTYVMIVGQLIQHRVSSSLFGSLKMRG 207
           C+FY  F H + Y ++    Q +  ++ +++      RG
Sbjct: 866 CIFYTLFAHLLHYDFIKADAQKLLPQILTAIHSQYSFRG 904


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 432 CGLTMEDLNALVNRIERLTA 491
           C +T+ DLNA+ NR+  LT+
Sbjct: 644 CPVTIRDLNAVENRLSSLTS 663


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 201 LIAGHPYYIFFF*FCESVLIKLNR*SLIYLNFFIFAY*TKNQKQL-KIH 58
           LIA   YY+F F F   + ++L R  +  +N+F   +  +  + L K+H
Sbjct: 173 LIANKNYYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQYSRFLDKVH 221


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/74 (21%), Positives = 35/74 (47%)
 Frame = +3

Query: 183 MGGQQSVRATHFQRPEKTATDPMLDELPDDHHISISNKMVERLVEDATLANTASINTGSS 362
           M  +QS+R+ +F+R +          + ++  +S+  K+ + +   A L +  S + G S
Sbjct: 1   MAKKQSIRSRNFRRSDPAYDLDSSTAIENETKLSVKEKVAKEIANIA-LRSGGSESNGIS 59

Query: 363 KADYKEKMYMEKLR 404
           K    +K   +K +
Sbjct: 60  KKKKNKKQTSKKAK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,184
Number of Sequences: 5004
Number of extensions: 51549
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)