Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j12
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    29   2.7  
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16...    29   2.7  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    28   6.2  
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154...    28   8.2  

>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +3

Query: 267  DDHHISISNKMVERLVEDATLANTASINTGSSKADYKEKMYMEKLRCMDDSHSERCGLTM 446
            DD  IS   + V    EDA L+    +     K    E +Y+    C D  H +   +T+
Sbjct: 1314 DDRAISFRTERVVFPCEDADLSEVFPVCRLCQKCYSGESIYIACEDCGDWFHGDIYSITL 1373

Query: 447  EDLNALV 467
            E++N L+
Sbjct: 1374 ENVNNLI 1380


>05_01_0024 -
           164618-165139,166884-166949,167046-167216,167321-167422,
           167538-167600,167679-167825,168234-168359,168742-168921,
           169183-169322,169688-169861,170096-170123
          Length = 572

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 516 CVDCKAKLLQCYNPGNTDTIKCWDAVGDFAKCVHEA 623
           C + ++   QCY     D +KC +AV  F  CV  A
Sbjct: 527 CTEERSNCRQCYVSNAQDPLKCAEAVKRFEACVRLA 562


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +3

Query: 252  LDELPDDHHISISNKMVERLVEDATLANTASINTGSSKADYKEKMYMEKLRCMDDSHSER 431
            LDE+  D H S S++M    +++  +     ++T    +    +  + K     + +S  
Sbjct: 963  LDEVQQDDHASKSSEMERHFIDEVIVEFLTKLSTTVEDSTEVHRKSISKANMSGELYSRN 1022

Query: 432  CGL--TMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
              L    E ++ L +       N++D     V C ++ LQ
Sbjct: 1023 ITLMGEKEGISVLEDNPAEFWLNLLDGRSPHVSCISEPLQ 1062


>02_01_0232 +
           1543597-1543800,1544189-1544377,1544695-1544859,
           1545199-1545459,1546059-1546271,1546365-1546587,
           1547974-1548149
          Length = 476

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 579 CWDAVGDFAKCVHEATAIKL 638
           C+  +G+F KC+H+ + IK+
Sbjct: 406 CFSELGNFVKCMHDGSLIKI 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,115,567
Number of Sequences: 37544
Number of extensions: 295276
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)