Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25j12
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014839-1|AAH14839.1| 227|Homo sapiens coiled-coil-helix-coile... 50 1e-05
BC011596-1|AAH11596.1| 227|Homo sapiens coiled-coil-helix-coile... 50 1e-05
AK000427-1|BAA91157.1| 227|Homo sapiens protein ( Homo sapiens ... 50 1e-05
BC006123-1|AAH06123.1| 235|Homo sapiens coiled-coil-helix-coile... 41 0.005
AL354989-2|CAM21630.1| 412|Homo sapiens ubiquitin associated pr... 34 0.56
AL354989-1|CAI15298.1| 1119|Homo sapiens ubiquitin associated pr... 34 0.56
AL139113-6|CAM13516.1| 412|Homo sapiens ubiquitin associated pr... 34 0.56
AL139113-5|CAI39657.1| 1119|Homo sapiens ubiquitin associated pr... 34 0.56
L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens We... 31 5.2
AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicas... 31 5.2
AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein. 31 5.2
AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein. 31 5.2
AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein. 31 5.2
AB209652-1|BAD92889.1| 842|Homo sapiens Werner syndrome protein... 31 5.2
>BC014839-1|AAH14839.1| 227|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 3
protein.
Length = 227
Score = 49.6 bits (113), Expect = 1e-05
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +3
Query: 375 KEKMYMEKLRCMDDSHSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQCYN 554
++ Y E+L +++ SE +T E +E +S P+C D +AK+LQCY
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFKRY-ESHPVCADLQAKILQCYR 195
Query: 555 PGNTDTIKCWDAVGDFAKCVHEA 623
T+KC + CV+ A
Sbjct: 196 ENTHQTLKCSALATQYMHCVNHA 218
>BC011596-1|AAH11596.1| 227|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 3
protein.
Length = 227
Score = 49.6 bits (113), Expect = 1e-05
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +3
Query: 375 KEKMYMEKLRCMDDSHSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQCYN 554
++ Y E+L +++ SE +T E +E +S P+C D +AK+LQCY
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFKRY-ESHPVCADLQAKILQCYR 195
Query: 555 PGNTDTIKCWDAVGDFAKCVHEA 623
T+KC + CV+ A
Sbjct: 196 ENTHQTLKCSALATQYMHCVNHA 218
>AK000427-1|BAA91157.1| 227|Homo sapiens protein ( Homo sapiens
cDNA FLJ20420 fis, clone KAT02462. ).
Length = 227
Score = 49.6 bits (113), Expect = 1e-05
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +3
Query: 375 KEKMYMEKLRCMDDSHSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQCYN 554
++ Y E+L +++ SE +T E +E +S P+C D +AK+LQCY
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFKRY-ESHPVCADLQAKILQCYR 195
Query: 555 PGNTDTIKCWDAVGDFAKCVHEA 623
T+KC + CV+ A
Sbjct: 196 ENTHQTLKCSALATQYMHCVNHA 218
>BC006123-1|AAH06123.1| 235|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 6
protein.
Length = 235
Score = 40.7 bits (91), Expect = 0.005
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = +3
Query: 375 KEKMYMEKLRCMDDSHSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQCYN 554
++ Y E+L ++ ++E L+ E + +++E T EP+C +A++L CY
Sbjct: 151 RDTFYKEQLERIERKNAEMYKLSSEQFHEAASKMES-TIKPRRVEPVCSGLQAQILHCYR 209
Query: 555 PGNTDTIKCWDAVGDFAKCVHEA 623
+ + C D V + +CV A
Sbjct: 210 DRPHEVLLCSDLVKAYQRCVSAA 232
>AL354989-2|CAM21630.1| 412|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 412
Score = 33.9 bits (74), Expect = 0.56
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 450 DLNALVNRIERLTANIVDSEPICV-DCKAKLLQCYN---PGNTDTIKCWDAVGDFAKCVH 617
D A V ++ +T D + + DC + + N GN+DT W+ VG K
Sbjct: 52 DFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTS-WETVGCKKKNFA 110
Query: 618 EATAIKLRNRKQKDEKESAR 677
+ + NR++K EKES+R
Sbjct: 111 KENSENKENREKKSEKESSR 130
>AL354989-1|CAI15298.1| 1119|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 1119
Score = 33.9 bits (74), Expect = 0.56
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 450 DLNALVNRIERLTANIVDSEPICV-DCKAKLLQCYN---PGNTDTIKCWDAVGDFAKCVH 617
D A V ++ +T D + + DC + + N GN+DT W+ VG K
Sbjct: 52 DFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTS-WETVGCKKKNFA 110
Query: 618 EATAIKLRNRKQKDEKESAR 677
+ + NR++K EKES+R
Sbjct: 111 KENSENKENREKKSEKESSR 130
>AL139113-6|CAM13516.1| 412|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 412
Score = 33.9 bits (74), Expect = 0.56
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 450 DLNALVNRIERLTANIVDSEPICV-DCKAKLLQCYN---PGNTDTIKCWDAVGDFAKCVH 617
D A V ++ +T D + + DC + + N GN+DT W+ VG K
Sbjct: 52 DFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTS-WETVGCKKKNFA 110
Query: 618 EATAIKLRNRKQKDEKESAR 677
+ + NR++K EKES+R
Sbjct: 111 KENSENKENREKKSEKESSR 130
>AL139113-5|CAI39657.1| 1119|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 1119
Score = 33.9 bits (74), Expect = 0.56
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 450 DLNALVNRIERLTANIVDSEPICV-DCKAKLLQCYN---PGNTDTIKCWDAVGDFAKCVH 617
D A V ++ +T D + + DC + + N GN+DT W+ VG K
Sbjct: 52 DFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINILLEGNSDTTS-WETVGCKKKNFA 110
Query: 618 EATAIKLRNRKQKDEKESAR 677
+ + NR++K EKES+R
Sbjct: 111 KENSENKENREKKSEKESSR 130
>L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens Werner
syndrome gene, complete cds. ).
Length = 1432
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 378 EKMYMEKLRCMDDS----HSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
EK + KL+ M HS RC + + ++++ + I+ +E C +C+++L
Sbjct: 886 EKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDH 945
Query: 546 CYNPGNTDTIKCWD 587
CY+ +++ WD
Sbjct: 946 CYSMDDSEDTS-WD 958
>AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicase
protein.
Length = 1432
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 378 EKMYMEKLRCMDDS----HSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
EK + KL+ M HS RC + + ++++ + I+ +E C +C+++L
Sbjct: 886 EKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDH 945
Query: 546 CYNPGNTDTIKCWD 587
CY+ +++ WD
Sbjct: 946 CYSMDDSEDTS-WD 958
>AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein.
Length = 1432
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 378 EKMYMEKLRCMDDS----HSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
EK + KL+ M HS RC + + ++++ + I+ +E C +C+++L
Sbjct: 886 EKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDH 945
Query: 546 CYNPGNTDTIKCWD 587
CY+ +++ WD
Sbjct: 946 CYSMDDSEDTS-WD 958
>AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein.
Length = 1432
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 378 EKMYMEKLRCMDDS----HSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
EK + KL+ M HS RC + + ++++ + I+ +E C +C+++L
Sbjct: 886 EKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDH 945
Query: 546 CYNPGNTDTIKCWD 587
CY+ +++ WD
Sbjct: 946 CYSMDDSEDTS-WD 958
>AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein.
Length = 1432
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 378 EKMYMEKLRCMDDS----HSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
EK + KL+ M HS RC + + ++++ + I+ +E C +C+++L
Sbjct: 886 EKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDH 945
Query: 546 CYNPGNTDTIKCWD 587
CY+ +++ WD
Sbjct: 946 CYSMDDSEDTS-WD 958
>AB209652-1|BAD92889.1| 842|Homo sapiens Werner syndrome protein
variant protein.
Length = 842
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 378 EKMYMEKLRCMDDS----HSERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQ 545
EK + KL+ M HS RC + + ++++ + I+ +E C +C+++L
Sbjct: 296 EKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDH 355
Query: 546 CYNPGNTDTIKCWD 587
CY+ +++ WD
Sbjct: 356 CYSMDDSEDTS-WD 368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,236,092
Number of Sequences: 237096
Number of extensions: 1686632
Number of successful extensions: 3076
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3076
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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