Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j12
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    32   0.45 
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        32   0.45 
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    32   0.45 
Z75529-8|CAA99788.2|  350|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    28   5.6  
AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81073-2|CAB03034.2|  245|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 570 TIKCWDAVGDFAKCVHEATAIKLRNRKQKDEKESARKSRHMAH 698
           +I+ WD   DF  CV +  +I    +++K   E A+K + M H
Sbjct: 469 SIRIWDRFLDFESCVGDLASILKVEKRRKTAYEEAQKDQTMNH 511


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 570 TIKCWDAVGDFAKCVHEATAIKLRNRKQKDEKESARKSRHMAH 698
           +I+ WD   DF  CV +  +I    +++K   E A+K + M H
Sbjct: 464 SIRIWDRFLDFESCVGDLASILKVEKRRKTAYEEAQKDQTMNH 506


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 570 TIKCWDAVGDFAKCVHEATAIKLRNRKQKDEKESARKSRHMAH 698
           +I+ WD   DF  CV +  +I    +++K   E A+K + M H
Sbjct: 469 SIRIWDRFLDFESCVGDLASILKVEKRRKTAYEEAQKDQTMNH 511


>Z75529-8|CAA99788.2|  350|Caenorhabditis elegans Hypothetical
           protein C44H9.8 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 4/143 (2%)
 Frame = +3

Query: 258 ELPDDHHISISNKMVERLVEDATLANTASINTGSSKADYKEKMYMEKL--RCMD--DSHS 425
           E  + H +S +  +  R  E  T     S+    +K D+      EKL  R +D  DS S
Sbjct: 105 EAAEHHKVSSTTSIRGRFNEGFTSFVDGSMTRRDTKNDFLVLEASEKLPLRLLDYFDSVS 164

Query: 426 ERCGLTMEDLNALVNRIERLTANIVDSEPICVDCKAKLLQCYNPGNTDTIKCWDAVGDFA 605
             CG +      + +        I   +    DC+ +L  C N  N     C DA+ +  
Sbjct: 165 SECGASKRSAGVVASCGFMFEYCI---QFFGRDCQTRLSTCLNDINEMDYTCEDAIRNIV 221

Query: 606 KCVHEATAIKLRNRKQKDEKESA 674
           K ++  T    +  K     E A
Sbjct: 222 KVLYPDTNATSKLEKYSSTVEVA 244


>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 207 ATHFQRPEKTATDPMLDELPDDHHISI 287
           AT  +  +  ATD M  E PDDH  SI
Sbjct: 409 ATFAETSDNKATDEMSMEAPDDHQFSI 435


>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 5   MTSYLFVYSFFYFTSKLK*IFNCF*FFV*YAKIKKFKYISDYLFSLI 145
           M  +  V+ F   TS L   FN   F V Y ++ K K+ + Y+++ I
Sbjct: 1   MVQFFLVFGFINLTSLL---FNALVFHVIYKQVDKSKFPTIYIYNTI 44


>Z81073-2|CAB03034.2|  245|Caenorhabditis elegans Hypothetical
           protein F30F8.3 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +3

Query: 357 SSKADYKEKMYMEKLRCMDDSHSERCGLTMEDLNALVNRIERLTAN---IVDSEPICVDC 527
           +S   Y+   Y++ +    DS ++RCG+T  D+   VN    +TA+   IV+S   C+  
Sbjct: 81  TSSNSYERITYVDYVSA--DSPADRCGITRGDMVIAVNEKSVVTASHAEIVESIAQCLQV 138

Query: 528 KAKLL 542
              L+
Sbjct: 139 SLVLV 143


>Z49132-5|CAA88984.1|  396|Caenorhabditis elegans Hypothetical
           protein ZK666.5 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 617 MNALREVSDSIPALNCVCITGVIALQKLSFTIYTYRFGV 501
           +N + E+   +   NC C T  I  + L   + +YR+G+
Sbjct: 211 LNVIGEIQGFLLQANCFCPTSWIQYRALHDDVDSYRYGI 249


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 419 SFRKMWVNDGRSQRISQSHRTPYSEY 496
           S R   ++ G S R S SH+TP S Y
Sbjct: 156 SRRSSTISSGNSNRYSNSHKTPSSVY 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,864
Number of Sequences: 27780
Number of extensions: 291440
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)