Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j07
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           35   0.044
10_01_0054 - 773395-774518,776957-777124,777455-778376                 32   0.41 
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251           30   1.6  
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118           29   2.2  
02_01_0039 - 271926-273503                                             28   6.7  
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    27   8.8  
03_02_0198 + 6344952-6347483                                           27   8.8  

>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
 Frame = +3

Query: 162 CPSDFNPSTPSMYDCRKYGH--CLPSNDLITRFECLPN---FPTGIFRCTTGETLGSGAD 326
           CP  F    P ++ C   GH  C P  D +      P+   F T   RC   E + +  +
Sbjct: 39  CPVCFQILRPPVFQC-DLGHLVCSPCRDNLPAGGKCPSPSCFGTPSVRCVAMERVVNSVE 97

Query: 327 KGCCYQ---CPEYFAYQHMTFYDLHLYLRPCRKPSAKTG 434
             C Y    CP+  AY ++T ++      PC  P    G
Sbjct: 98  VACAYAEHGCPDKIAYANITEHEKTCPHAPCFCPEPGCG 136


>10_01_0054 - 773395-774518,776957-777124,777455-778376
          Length = 737

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +3

Query: 138 CQECPSCACPSDFN-----PSTPSMYDCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTG 302
           C++   CA P+ +       +TP  Y+CR +    PS D   + EC   FP    R   G
Sbjct: 306 CKDIDECAHPNKYPCHGVCRNTPGDYECRCHTGYQPSGDGPKKQECSSKFPFPA-RLAVG 364

Query: 303 ETLG 314
            TLG
Sbjct: 365 ITLG 368


>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
          Length = 347

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
 Frame = +3

Query: 162 CPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNF--PTGIFRCTTGETLGSGADKGC 335
           CP   N   P ++ C+  GH L S          P      G  RC   E +    +  C
Sbjct: 86  CPVCTNSMYPPIHQCQN-GHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPC 144

Query: 336 CY---QCPEYFAYQHMTFYDLHLYLRPCRKPSA 425
            Y    CPE F Y     ++     RP   P A
Sbjct: 145 KYCSLGCPEIFPYYSKIKHEAQCMFRPYNCPYA 177


>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
          Length = 361

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
 Frame = +3

Query: 162 CPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNF--PTGIFRCTTGETLGSGADKGC 335
           CP   N   P ++ C+  GH L S          P      G  RC   E +    +  C
Sbjct: 100 CPVCTNSMFPPIHQCQN-GHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPC 158

Query: 336 CY---QCPEYFAYQHMTFYDLHLYLRPCRKPSA 425
            Y    CPE F Y     ++     RP   P A
Sbjct: 159 KYCSLGCPEIFPYYSKIKHEAQCSFRPYNCPYA 191


>02_01_0039 - 271926-273503
          Length = 525

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 285 FRCTTGETLGSGADKGCCYQCPEYFAYQH 371
           FR      +    +KG C+ CPE F+  H
Sbjct: 263 FRRLLAAEMAERREKGLCFNCPEKFSKDH 291


>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 106 DQRVLKLTRKRVKNVLLAPALVISTHQLQACTIVGNM 216
           D+  +KLT K+  N LL  A V+   QL+   +VG +
Sbjct: 456 DEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGGI 492


>03_02_0198 + 6344952-6347483
          Length = 843

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +3

Query: 150 PSCACPSDFNPSTPSMYDCRK-YGHCLPSNDLITR---FECLPNFPTGIFRCTTGETLGS 317
           P C CP+ F P +   +      G C+  + L      F  LP +   +   +     G+
Sbjct: 321 PECRCPAGFEPRSSEEWRLENAAGGCVRRHPLECHGDGFLALP-YTVRLPNGSVEAPAGA 379

Query: 318 GADKGCCYQC 347
           G DK C + C
Sbjct: 380 GNDKACAHTC 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,865
Number of Sequences: 37544
Number of extensions: 281272
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)