Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25j07
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    32   0.37 
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    32   0.37 
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    32   0.37 
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    31   0.85 
L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z83221-8|CAI79139.1|  469|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z83221-7|CAB05707.2|  503|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 248
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 977  CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1007


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 248
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 248
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 977  CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1007


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 248
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 248
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 123 TNKETCQECPSCACPSDFNPSTPSMYD---CRKYGHCLPSNDLITRFECLPNFPTGIFRC 293
           T++ T  ECPS    +D         D   C   GHC+     +    CLP+F TGI+  
Sbjct: 261 TSRTTQCECPSGFMGADCKELQARPCDREPCLNGGHCVDDGQNLFTCFCLPSF-TGIYCG 319

Query: 294 TTGETLGSGAD 326
              + L +G+D
Sbjct: 320 EPVDCLVNGSD 330


>L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical
           protein C02D5.1 protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 316 LPRVSPVVHRNIPVGKLG-RHSNRVMRSFEGKQWPYFRQSYMLGVDG 179
           +P  S  VHR+ P+ KLG R S+ V   FE  + P    SY++G +G
Sbjct: 209 IPLDSIGVHRSTPLDKLGMRSSDTVQLFFEDVRVP---SSYIIGEEG 252


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +3

Query: 129 KETCQECPSCA---CPSDFNPSTPSMYDC 206
           +  CQECPSC     P  FNP     ++C
Sbjct: 42  RSVCQECPSCCGNDGPQPFNPVFNIHFNC 70


>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 295 VHRNIPVGKLG-RHSNRVMRSFEGKQWPYFRQSYMLGVDG 179
           VHR+ P+ KLG R S+ V   FE  + P    SY++G +G
Sbjct: 250 VHRSTPLDKLGMRSSDTVQLFFEDVRVP---SSYIIGEEG 286


>AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical
           protein Y41D4A.1 protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 123 TNKETCQECP-SCACPSDFNPSTPSMYDCRKYGHCLPS--NDLITRFECLPNFPTGIFRC 293
           T+   C ECP   A  +  N   P+ + C+  G+C PS  N+      C+ N      RC
Sbjct: 185 TSTNYCCECPYGQAYGTCGNGICPNGFSCQANGNCCPSCPNNQTPFGSCVAN------RC 238

Query: 294 TTGETLGSGADKGCC 338
             G T  SG    CC
Sbjct: 239 GGGRTCRSG--NICC 251


>Z83221-8|CAI79139.1|  469|Caenorhabditis elegans Hypothetical
           protein C49A1.4b protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = -1

Query: 607 LQALIKKSICYLIITQIHFLTNSRLIDVPIYVFNLFIDLKLIFKTFPNGVVGG 449
           +Q+   K   ++ IT      +++ +++P++  N   DL  ++    N ++GG
Sbjct: 417 IQSRFGKKCSFICITSGDTANSAKRLNIPVWPLNSNTDLDKLYSALDNFLLGG 469


>Z83221-7|CAB05707.2|  503|Caenorhabditis elegans Hypothetical
           protein C49A1.4a protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = -1

Query: 607 LQALIKKSICYLIITQIHFLTNSRLIDVPIYVFNLFIDLKLIFKTFPNGVVGG 449
           +Q+   K   ++ IT      +++ +++P++  N   DL  ++    N ++GG
Sbjct: 451 IQSRFGKKCSFICITSGDTANSAKRLNIPVWPLNSNTDLDKLYSALDNFLLGG 503


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 568 ITQIHFLTNSRLIDVPIYVFNLFIDLKLIFKTFP 467
           + Q +F  + R++  P+Y+F +F+ + L+F  FP
Sbjct: 59  VYQFYFRRSKRIL--PLYLFIVFVGVILVFVLFP 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,867
Number of Sequences: 27780
Number of extensions: 264381
Number of successful extensions: 684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)