Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25i23
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   202   1e-52
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    27   6.5  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    27   6.5  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  202 bits (493), Expect = 1e-52
 Identities = 94/138 (68%), Positives = 110/138 (79%)
 Frame = +3

Query: 42  RKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 221
           +KR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK A
Sbjct: 14  KKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAA 73

Query: 222 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 401
              EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVK
Sbjct: 74  GVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVK 133

Query: 402 HGRPGIGATHSSRFIPLK 455
           HGRPGIGATHSSRFIPLK
Sbjct: 134 HGRPGIGATHSSRFIPLK 151


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 49  VFSGSSLTGELISISSLICPMSNSWN 126
           VFSG++L   L + +SL   +SN WN
Sbjct: 12  VFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 49  VFSGSSLTGELISISSLICPMSNSWN 126
           VFSG++L   L + +SL   +SN WN
Sbjct: 12  VFSGATLLVSLFAAASLYSQVSNIWN 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,586
Number of Sequences: 27780
Number of extensions: 212224
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)