Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25i22
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   3.7  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    27   3.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    26   4.9  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   8.6  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   8.6  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   8.6  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   8.6  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 70  PRISCWASSLTVPDWGSGVSRLNV-CSNKLTHYTELTE 180
           P+ +   S +  P+   G+  +N+ C N LT  TELT+
Sbjct: 608 PKKTMDGSKIEPPESSKGILNVNLGCVNNLTELTELTK 645


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 97  LTVPDWGSGVSRLNVCSNKLTHYTE 171
           +T P WG G S +   S   THY E
Sbjct: 169 ITAPGWGYGRSNIPFHSLNFTHYIE 193


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 585 LKKLVKFKI*KHFTVKTYLLFWLNYKSK 668
           ++++V  K+ ++  VK Y + WLNY S+
Sbjct: 10  VERIVDEKLDRNGAVKLYRIRWLNYSSR 37


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 594 LVKFKI*KHFTVKTYLLFWLN 656
           L+ F I K+F VK +L  W+N
Sbjct: 87  LIVFAIDKNFEVKDFLSIWIN 107


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 594 LVKFKI*KHFTVKTYLLFWLN 656
           L+ F I K+F VK +L  W+N
Sbjct: 107 LIVFAIDKNFEVKDFLSIWIN 127


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 594 LVKFKI*KHFTVKTYLLFWLN 656
           L+ F I K+F VK +L  W+N
Sbjct: 87  LIVFAIDKNFEVKDFLSIWIN 107


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 594 LVKFKI*KHFTVKTYLLFWLN 656
           L+ F I K+F VK +L  W+N
Sbjct: 87  LIVFAIDKNFEVKDFLSIWIN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,435
Number of Sequences: 5004
Number of extensions: 65099
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)