Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25i18
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   5.7  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   5.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   9.9  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   9.9  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    25   9.9  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 158 SSLHS*FVFIEFMNIDTQLELIFSYF-NIRP*ISCLRN 48
           ++LH+ ++F  F++ DT  +LI + + N  P ++ L N
Sbjct: 276 TTLHARYIFASFISRDTTYQLIIAIWKNTHPFLTTLAN 313


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 179  REAREKDENWLRHEKVYKKIQITSGLQSEE 268
            RE RE  E W    + YKK Q T+  ++++
Sbjct: 1119 REWRENSEEWKEKMREYKKWQSTANQRAKQ 1148


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 581 TYVQHNNVHYFVKLVKN*ILVAVH----ILFNFIKKILYAK 471
           T VQH   +YF KL++   L+  H      FN + +I+YA+
Sbjct: 343 TLVQHTKNNYFQKLLQLQHLLVSHADSFTQFNLLDEIIYAE 383


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 23  ITSIYKRNSSSNTKSKVEY*NRK 91
           +TS+++R+ SSNT +  +Y +RK
Sbjct: 109 VTSLHRRSLSSNTSTPRKYHSRK 131


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 362 WYQSFTGRSCFPIFSRRCYRENAFRRQLRFNLLRTAT 252
           W+Q F+G +    FS   ++   F+  +  +++  AT
Sbjct: 341 WFQQFSGTNAIQYFSAIIFQSVGFKNSISVSIVVGAT 377


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 620 SKKEPSVLHYLYITYVQHNNVHYFVKLVKN 531
           SKKEP  L+ L    V+ NN+   ++L  N
Sbjct: 245 SKKEPLYLNTLLALLVESNNIQEALELSSN 274


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 320 SRRCYRENAFRRQLRFNLLRTATRR*SEFSCK 225
           SR+   EN FR  L F  +RT  +   E SC+
Sbjct: 41  SRQPSSENEFRENLFFKEMRTNGKNEHETSCR 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,191
Number of Sequences: 5004
Number of extensions: 42580
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)