Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25i07
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0434 - 3089300-3089698 29 2.9
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 29 3.8
02_04_0428 - 22810672-22811079 29 3.8
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403... 29 3.8
01_06_0651 - 30878853-30879150,30879250-30879479 29 3.8
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 5.0
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 28 8.7
09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499... 28 8.7
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 28 8.7
>06_01_0434 - 3089300-3089698
Length = 132
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 144 DECWSKDDLAKLETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRAR 323
DE ++ LA ++ R+ + + + V N K I N Y I +DN+ PY A
Sbjct: 4 DEMRMREKLATMDERQAMAMRLTWISELVASNKKSIAGNKAYILALIDAIDNDRCPYTAA 63
Query: 324 ILKQSL 341
L +
Sbjct: 64 ELSDKI 69
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = -1
Query: 199 SNVFLVSSFARSSLLQHSSLVPRL*NNILPTLPSITFININKTMKIIIESKIYQKSLFM 23
S+ FLV++F+R ++ RL ++I TLP +N ++ III+ Y ++M
Sbjct: 171 SHCFLVNAFSRETIQLPRPSAFRLSHHICKTLP---IVNTTGSVDIIIQEHEYSGRIYM 226
>02_04_0428 - 22810672-22811079
Length = 135
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = -1
Query: 646 ELSNFGFGRCIQELVSRFVTRLEHESENFPGPTMSLDTVKLVQGILRSGSFHP 488
+LS + +G C +E +S + ++ N PG + + +G + HP
Sbjct: 83 DLSTYHYGDCFKEQMSLVYDPVSNDYRNLPGVETRVANFGIARGFHSKNTLHP 135
>02_01_0548 +
4035265-4035431,4035517-4035651,4035859-4036081,
4036282-4036468,4036627-4036811,4037435-4037572,
4037995-4038123
Length = 387
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 706 DAKFNRPPDLKGNAIVVGDIELSNFGFGRCIQELVSRFVTRL-EHESENFPGPTMSLDTV 530
D RPP G+ ++V D G+G + VS F RL + E E PT +L+
Sbjct: 8 DRIIGRPPPKTGDVVLVADGAEKPIGWG--LYNSVSMFCVRLMQLEEEAKRDPTCALNME 65
Query: 529 KLVQGILRS 503
+L++ + S
Sbjct: 66 RLLEARILS 74
>01_06_0651 - 30878853-30879150,30879250-30879479
Length = 175
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 432 RQMEEFFKEIKSYLNTGGLGWKEPERNIPWTNFT-VSKLIVGPGKFSDSCSSLVTKRDTN 608
R+ E +K+IKS + L + +IP N T ++K K SC++L+ + +T
Sbjct: 104 RKKENPYKKIKSSKSYVALDGNQEACHIPGANSTSIAK------KSGSSCANLMARNNTK 157
Query: 609 SCIHLPNP 632
S ++ P P
Sbjct: 158 SMLYRPPP 165
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +3
Query: 186 RKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRARILKQSLLDTIGAHL 365
RKT ++++ ++ +E N+K+ ++ + RK + +NE E R+L++ L I +
Sbjct: 530 RKT-KEMLSECVEQMEFNAKFYHEQIERLRKDTEEKENEFE----RLLQEELARAIECDV 584
Query: 366 RSE 374
SE
Sbjct: 585 DSE 587
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +3
Query: 309 PYRARILKQSLLDTIG---AHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNT 479
PY + K L +G + L ILP + ++ GYI YR + ++ +T
Sbjct: 487 PYHTEVPKVLLFGLLGFTCSVLAPLILPFLLVYFFLGYIVYR-----NQLLNVYRTRYDT 541
Query: 480 GGLGW 494
GGL W
Sbjct: 542 GGLYW 546
>09_04_0725 +
19749227-19749361,19749705-19749772,19749869-19749938,
19750244-19751482,19755359-19755423,19755502-19755655,
19755725-19755733
Length = 579
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +3
Query: 555 PGKFSDSCSSLVTKRDTNSCIHLP-------NPKFDNSISPTTIALPFKSGG 689
PG FS SSL TK D+N+ I K D+SI+P T + +GG
Sbjct: 232 PGNFSHFISSLTTKDDSNNSISSSGNITVDIQNKGDDSIAPCTNSSLGSTGG 283
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +3
Query: 309 PYRARILKQSLLDTIG---AHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNT 479
PY + K L +G + L ILP + ++ GY+ YR +F + +T
Sbjct: 481 PYHTEVPKVLLFGLLGFTCSVLAPLILPFLLVYFFLGYVVYR-----NQFLNVYCTKYDT 535
Query: 480 GGLGW 494
GGL W
Sbjct: 536 GGLYW 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,889,463
Number of Sequences: 37544
Number of extensions: 363802
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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