Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25i07
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z82263-1|CAB62792.1|  181|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z73102-3|CAA97409.1|  337|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   5.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   5.9  
AL009246-5|CAA15839.1|  357|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   5.9  
Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF026206-6|AAK39305.3|  167|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 219 LQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRARILKQSLLDTIG 356
           L+     S    D LRYF   + Y+ N  +   AR+L +SLL+ IG
Sbjct: 180 LEKTTNRSNTSKDCLRYFNFMMTYLSNSSKSSFARLLLKSLLEYIG 225


>Z82263-1|CAB62792.1|  181|Caenorhabditis elegans Hypothetical
           protein C47A4.1 protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/91 (23%), Positives = 40/91 (43%)
 Frame = +3

Query: 330 KQSLLDTIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKEPER 509
           ++S+ DT+  H     L   R+  +     +R A Q EE+  + K YL    +G  + E 
Sbjct: 59  RESIYDTLAWHTIIFPLTIFRYIKWTALWYWRFAIQKEEYDDDAKLYLIRKYIGVSQMEF 118

Query: 510 NIPWTNFTVSKLIVGPGKFSDSCSSLVTKRD 602
           +  +T+  +  L         +C++   +RD
Sbjct: 119 DQKYTDEDIDDLFERECWLKTNCATWKAERD 149


>Z73102-3|CAA97409.1|  337|Caenorhabditis elegans Hypothetical
           protein B0035.2 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/91 (23%), Positives = 40/91 (43%)
 Frame = +3

Query: 330 KQSLLDTIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKEPER 509
           ++S+ DT+  H     L   R+  +     +R A Q EE+  + K YL    +G  + E 
Sbjct: 215 RESIYDTLAWHTIIFPLTIFRYIKWTALWYWRFAIQKEEYDDDAKLYLIRKYIGVSQMEF 274

Query: 510 NIPWTNFTVSKLIVGPGKFSDSCSSLVTKRD 602
           +  +T+  +  L         +C++   +RD
Sbjct: 275 DQKYTDEDIDDLFERECWLKRNCATWKAERD 305


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
 Frame = +3

Query: 177  LETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIK--YVDNEVEPYRARILKQ-SLLD 347
            +E+ +   D +   +Q  E N K + + L+ ++   +    D ++ P+  + +K+ S + 
Sbjct: 1083 IESSRVNADEIRKTVQLTENNIKKLENCLKVYKIQGERDLFDEKMRPFHEKAVKEFSTVS 1142

Query: 348  TIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKE 500
            ++   ++++    ++  YYA      K   MEEFF +I+++       WKE
Sbjct: 1143 SMCGKMKNDWESLVK--YYAFN---DKKYPMEEFFADIRTFSEQYSNAWKE 1188


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
 Frame = +3

Query: 177  LETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIK--YVDNEVEPYRARILKQ-SLLD 347
            +E+ +   D +   +Q  E N K + + L+ ++   +    D ++ P+  + +K+ S + 
Sbjct: 1083 IESSRVNADEIRKTVQLTENNIKKLENCLKVYKIQGERDLFDEKMRPFHEKAVKEFSTVS 1142

Query: 348  TIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKE 500
            ++   ++++    ++  YYA      K   MEEFF +I+++       WKE
Sbjct: 1143 SMCGKMKNDWESLVK--YYAFN---DKKYPMEEFFADIRTFSEQYSNAWKE 1188


>AL009246-5|CAA15839.1|  357|Caenorhabditis elegans Hypothetical
           protein C47F8.6 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 414 IPYRKARQMEEFFKEIKSYLNTGGLGWKEPERNIPWTNFTVSKL 545
           IP R   ++ +F  +IK   N   + W   + NIP+ NF +  L
Sbjct: 297 IPIRDMPKLYKFPHDIKKNDNKDIIAWHNYKNNIPYLNFFMKGL 340


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
 Frame = +3

Query: 177 LETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIK--YVDNEVEPYRARILKQ-SLLD 347
           +E+ +   D +   +Q  E N K + + L+ ++   +    D ++ P+  + +K+ S + 
Sbjct: 666 IESSRVNADEIRKTVQLTENNIKKLENCLKVYKIQGERDLFDEKMRPFHEKAVKEFSTVS 725

Query: 348 TIGAHLRSEILPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGGLGWKE 500
           ++   ++++    ++  YYA      K   MEEFF +I+++       WKE
Sbjct: 726 SMCGKMKNDWESLVK--YYAFN---DKKYPMEEFFADIRTFSEQYSNAWKE 771


>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 171 AKLETRKTFEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVE 308
           ++   R  FED M PV +     S+Y+NDN R  +  I  ++  ++
Sbjct: 23  SQASNRSAFEDKMSPVCK-----SRYVNDNQRLEQSRITMLETRIK 63


>AF026206-6|AAK39305.3|  167|Caenorhabditis elegans Hypothetical
           protein T28B4.4 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 54  SMIIFMVLLIFIKVIDGNVGSILFYN 131
           S+IIF++LLI I V   N+GS  +YN
Sbjct: 102 SLIIFILLLISIIVFAANIGS-FYYN 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,882
Number of Sequences: 27780
Number of extensions: 352156
Number of successful extensions: 1114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)