Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25i02
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    38   8e-04
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    27   1.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   5.9  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   5.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   5.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   7.8  

>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
 Frame = +3

Query: 156 EVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKPYKYIMRITITQK--- 326
           ++++I  +  +  L  + Y   +T +    +    L  LNK  + YK+I+  T+ QK   
Sbjct: 9   KLEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKETQSYKWIVSSTLVQKLPE 68

Query: 327 --NGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWALAL 449
                G+H A A  W+   DG  T++   + +  +++I  +++
Sbjct: 69  DHPSRGVHAAHAACWNCEKDGMTTIKESGEAIDVVLSIMWISI 111


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 204 SRPNTTLHCLLLSVALHRR*MLNHFTKIPLRHPLEPLVTIN 82
           +RP   +H    S AL  R +  H T++ LR  L P  T N
Sbjct: 64  TRPTALIHITKYSEALASRLLKGHMTQLSLRTILPPAHTKN 104


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  VSLKYKIHHCKQVKRNKELIVTNGSRG 109
           VS      HCK+ K  K++IV   +RG
Sbjct: 113 VSFDLMARHCKKNKWKKKMIVLTAARG 139


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 346 QPLRTTGTSLQMARAQCVGKISTCIAL*IYGRLLFK 453
           + L T  T+ ++A AQ VGK++  + L ++ + L+K
Sbjct: 557 EALLTVSTAFEIASAQGVGKLNLDLDLGLFVQRLYK 592


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 539 YTASAKHFEHLVVSSSYIKNNVIRRGFLYLKSKRPYIHN 423
           YT       + +V + Y K  + RRG  YL+   P++ N
Sbjct: 57  YTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLAN 95


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 456  IFEEQAPIYSQCNTCTYFPNALCTCHL 376
            +FE +AP  +  + CT    +   CHL
Sbjct: 1783 LFENKAPFVNSTSICTAVSESRSCCHL 1809


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
 Frame = +3

Query: 147 NVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKP-YKYIMRITITQ 323
           +V E+  +   +    L  N Y    +P     +  K+    +    P  + +  +   +
Sbjct: 578 HVPELYSVEEHSNVYSLLSNIYGRIESPITAWDVLSKSFPPGSMTGAPKLRSVRMLEPLE 637

Query: 324 KNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 443
           ++G G+++    YWD+       V   + + Y   + W +
Sbjct: 638 QHGRGIYSGTLGYWDVTGSAEFNVIIRSAFKYKADDYWRI 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,120
Number of Sequences: 5004
Number of extensions: 48368
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)