Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h24
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 247 1e-66
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.28
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 0.49
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.86
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 27 2.0
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 27 3.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 26 6.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 8.0
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 247 bits (605), Expect = 1e-66
Identities = 113/167 (67%), Positives = 139/167 (83%)
Frame = +3
Query: 204 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 383
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 384 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 563
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 564 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGE 704
+ FRGLF+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGE
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGE 167
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 674 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 546
L Q Q L + ++ D DL PEV ++ +EES G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 0.49
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 120 GDEIRSLDLDKPEHLMPVMRPFSLSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKG 299
G +DLD PEHL P P S K ++ P P ++++ G S Y+
Sbjct: 150 GSSDHPIDLDNPEHLTP---PSSFITAKQLSRLPTPLPPPSSSSLPTGTISTNSFCPYER 206
Query: 300 K 302
K
Sbjct: 207 K 207
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 28.7 bits (61), Expect = 0.86
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 183 FSLSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 356
F+LS + + P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 86 SHDDGTQVLLPRRRN*KPGPGQARAP---HACHETFLFEFQQDAS 211
S +DGT + LP R+ P P A H H++ L EF + AS
Sbjct: 129 SKNDGTNLSLPPSRHQSPPPSSVLASQRHHRRHDSELEEFARRAS 173
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 600 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGE 704
+NL++I + LPVG +++ LR V T K+G+
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGD 128
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -2
Query: 415 PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 236
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 6.0
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +3
Query: 207 PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 347
P+ + KPA +T V DI+L D G K +V+F YP T C
Sbjct: 30 PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89
Query: 348 PTEIIAFSEKADEFRKIGCEVLGASTDS 431
+ F + + + EVLG S D+
Sbjct: 90 TKQGCGFRDNYPKIQASDYEVLGLSFDT 117
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 467 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 631
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,119
Number of Sequences: 5004
Number of extensions: 47317
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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