Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h18
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81125-4|CAB03383.3| 594|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 31 1.0
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 31 1.0
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 31 1.0
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 30 1.4
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.4
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 29 2.4
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 29 2.4
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 29 2.4
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.4
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical ... 29 4.2
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 7.3
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 28 7.3
Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z81125-4|CAB03383.3| 594|Caenorhabditis elegans Hypothetical
protein T22A3.6 protein.
Length = 594
Score = 31.9 bits (69), Expect = 0.45
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Frame = +2
Query: 326 GCSKSGLVTIWTWDKGAVLRDTHLQIPANLIVLT-----FDLINENECFITGAGGSYSKN 490
G +S ++ T ++ + T + PANL +L D I+ E + +N
Sbjct: 13 GNLRSKFDSVHTHNQKVIYSSTSEKSPANLQLLEKIKEKLDEIDAQEMEANREYDDFRRN 72
Query: 491 IHYASYSIKTGELLCEYGTRIWNTQPLIKVALGWNNDDRFAAICNGTKSLYIQSIYNQNT 670
+ +A K ++ G +I+N I + +GW + A K L++ + +
Sbjct: 73 VTFAKRQHKKNGIIRALGHKIYNYGITILIFIGWYKPPKKPA--KSVKKLFLTKSFTRTF 130
Query: 671 SAIFYNFS 694
S F N S
Sbjct: 131 SQKFVNVS 138
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 242 LVRTLESETPIDGFVGIEFPQNEDYNLYGCSKSGLVTIWTWDKGAVLRDTHLQIPANLIV 421
LVR+++S T V P + GC + W W G L L P N +
Sbjct: 114 LVRSMQSHTVSITIVRFT-PDDSTLISIGCQHDAQIFTWDWRTGHDLGVGKLMSPVNALT 172
Query: 422 LTFD 433
++FD
Sbjct: 173 ISFD 176
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 242 LVRTLESETPIDGFVGIEFPQNEDYNLYGCSKSGLVTIWTWDKGAVLRDTHLQIPANLIV 421
LVR+++S T V P + GC + W W G L L P N +
Sbjct: 114 LVRSMQSHTVSITIVRFT-PDDSTLISIGCQHDAQIFTWDWRTGHDLGVGKLMSPVNALT 172
Query: 422 LTFD 433
++FD
Sbjct: 173 ISFD 176
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 242 LVRTLESETPIDGFVGIEFPQNEDYNLYGCSKSGLVTIWTWDKGAVLRDTHLQIPANLIV 421
LVR+++S T V P + GC + W W G L L P N +
Sbjct: 114 LVRSMQSHTVSITIVRFT-PDDSTLISIGCQHDAQIFTWDWRTGHDLGVGKLMSPVNALT 172
Query: 422 LTFD 433
++FD
Sbjct: 173 ISFD 176
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -3
Query: 291 IPTN-PSMGVSDSKVLTSSHVCTLYTCTISSTIT-ATDSPSGENI 163
IP N P + DS+V T+SHV T T T + T+ ++S + +NI
Sbjct: 1041 IPVNSPFVKREDSRVSTTSHVSTASTATTTGTVVQCSNSLNRQNI 1085
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 503 SYSIKTGELLCEYGTRIWNTQPLIKVALGW 592
S +I+ LLC Y + W +PL+ V W
Sbjct: 674 SVAIRNTHLLCYYSSYDWRVRPLVSVVKEW 703
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 503 SYSIKTGELLCEYGTRIWNTQPLIKVALGW 592
S +I+ LLC Y + W +PL+ V W
Sbjct: 432 SVAIRNTHLLCYYSSYDWRVRPLVSVVKEW 461
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 503 SYSIKTGELLCEYGTRIWNTQPLIKVALGW 592
S +I+ LLC Y + W +PL+ V W
Sbjct: 368 SVAIRNTHLLCYYSSYDWRVRPLVSVVKEW 397
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 503 SYSIKTGELLCEYGTRIWNTQPLIKVALGW 592
S +I+ LLC Y + W +PL+ V W
Sbjct: 597 SVAIRNTHLLCYYSSYDWRVRPLVSVVKEW 626
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 503 SYSIKTGELLCEYGTRIWNTQPLIKVALGW 592
S +I+ LLC Y + W +PL+ V W
Sbjct: 674 SVAIRNTHLLCYYSSYDWRVRPLVSVVKEW 703
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 176 DGESVAVIVEDIVHVYNVQTCELV-RTLESETPI 274
DG++VAV + ++ YN++T E V +ES PI
Sbjct: 30 DGQTVAVSANEYLNFYNMRTAEKVNEIIESTKPI 63
>AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical
protein H24K24.2 protein.
Length = 490
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 428 FDLINENECFITGAGGSYSKNIHYASYSIKTGELLCEYGTRIWNTQPLIKVAL--GWNND 601
+D++ E F+ S+N+ ++ E+ +I N P +K G ND
Sbjct: 83 YDIVRFLESFLN----EESRNVLHSLEITMESPFAKEWPAKINNMLPALKCFAINGQVND 138
Query: 602 DRFAAICNGTKSLYIQSIYNQN 667
D F+ +C G +L + I N N
Sbjct: 139 DEFSHLCIGFSNLRVLDISNTN 160
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 FSPDGESVAVI-VEDIVHVYNVQT--CELVRTLESETPIDGFV-GIEFPQNEDYNLYGCS 334
F+ +G+ + ++ IV ++ + T C +V T T F F NEDY L+
Sbjct: 311 FTKNGKYILTSGMDSIVKLWELSTNRCLIVYTGAGATGAQDFATNASFNHNEDYVLFPDE 370
Query: 335 KSGLVTIW 358
KSG + W
Sbjct: 371 KSGSMCSW 378
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 300 GNSIPTNPSMGVSD-SKVLTSSHVCTLYTCTISSTITATDSPSGEN 166
G +PTN + SD S VL S+ TC S+T+T + S N
Sbjct: 1190 GVIVPTNAQVTYSDGSMVLHSAGTTATLTCLNSATLTGSSYSSCSN 1235
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -3
Query: 300 GNSIPT-NPSMGVSDSKVLTS----SHVCTLYTCTISSTITATDSPSGEN 166
G+S PT NPS S T+ SH T TI ST+T + SG N
Sbjct: 1271 GSSTPTPNPSQSTSPVVSTTTGEMTSHGSTQTPSTIGSTVTQPSTVSGSN 1320
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 300 GNSIPTN--PSMGVSDSKVLTSSHVCTLYTCTISSTITATDSPSGEN 166
GNS+ N + V+ + TSS T T T ST T+TDS + E+
Sbjct: 167 GNSLNCNVLTDIPVTTTTSTTSSTTTTTATSTTESTSTSTDSTTTES 213
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 137 GRSIIERRPIFSPDGESVAV-IVEDIVHVYNVQTCELVRTLESE 265
G S+ R I+SPDG+ V V E VH+Y+V+ E + L+SE
Sbjct: 578 GESVYMNRLIWSPDGKHVFVGDDEGRVHMYDVR--ESLYVLKSE 619
>Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical
protein F53F8.1 protein.
Length = 354
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 425 TFDLINENECFITGAGGSYSKNIHYASYS-IKTGE--LLCEYGTRIW 556
T D + ++CF G G Y+K+ H ++ + +GE CE+ W
Sbjct: 246 TLDRLRVHKCFYQGCGKVYTKSSHLTAHERVHSGEKPYPCEWPGCSW 292
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,612
Number of Sequences: 27780
Number of extensions: 350312
Number of successful extensions: 983
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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