Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25h17
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   2.4  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    24   9.8  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    24   9.8  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    24   9.8  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 182 VMCINSVSRSQAQEYTSKSLQESRTSVGLL*MRILLSSTAI 304
           V+ +N  S  +  +Y SKS QE +  V  L ++++ SST +
Sbjct: 490 VLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTEL 530


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +2

Query: 101 RKEEMYGEDQNFXXXXXXXXPIPINAHVMCINSVSRSQAQEYTSKSLQESRTSVG 265
           R  EM+ E  NF         IP     M    +  S +Q+Y  ++   +R S G
Sbjct: 324 RSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAWMPARQSYG 378


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 211 SGPGVHFQESPRVKNICRFTIDAYFT*LNGNCHD*TKYLDI 333
           S  GVHF +SP + N C  +    F  +  +      Y+D+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSVKRLGTYIDV 152


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 44  IRDPGRTSKRICVGLPKKDRK 106
           +R PGR  K I +G+P K  +
Sbjct: 432 LRRPGRLEKEIEIGIPDKSAR 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,184
Number of Sequences: 5004
Number of extensions: 19760
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)