Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h13
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 100 4e-22
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 73 4e-14
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 40 3e-04
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 39 6e-04
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 31 0.16
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 26 4.5
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 7.9
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 99.5 bits (237), Expect = 4e-22
Identities = 52/121 (42%), Positives = 73/121 (60%)
Frame = +2
Query: 308 SLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDY 487
S + RK LVLDLDETLIHS R T G P + + +HP+ +++HKRPH+DY
Sbjct: 299 SKLPRKTLVLDLDETLIHSVSRGS-RTT--SGQPIEVHVP---GEHPILYYIHKRPHLDY 352
Query: 488 FLDIVSQWYELVVFTASMEIYGAAVADKLDNGRGILRRRFYRQHCTAEHGSSYTKKSVIN 667
FL VSQW+ L++FTAS++ Y + D L+ + I +R+YRQHC S S+ N
Sbjct: 353 FLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKRYYRQHCALVDSSFVKDISICN 412
Query: 668 M 670
+
Sbjct: 413 I 413
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 72.9 bits (171), Expect = 4e-14
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +2
Query: 320 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTID--KHPVRFFVHKRPHVDYFL 493
+K L+LDLDETL+HS + K P DFV+ + ID +H VR V KRP VD FL
Sbjct: 157 KKCLILDLDETLVHS--------SFKYIEPADFVVSIEIDGLQHDVR--VVKRPGVDEFL 206
Query: 494 DIVSQWYELVVFTASMEIYGAAVADKLDNGRGILRRRFYRQHCTAEHGS 640
+ +E+VVFTAS+ Y V D LD+ ++R R +R+ C G+
Sbjct: 207 KKMGDMFEIVVFTASLAKYADPVLDMLDHSH-VIRHRLFREACCNYEGN 254
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 39.9 bits (89), Expect = 3e-04
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Frame = +2
Query: 302 RLSLVRRKILVLDLDETLIHSHHDAMVRPTVK-PGTPPDFVLK----VTIDKHPVR---- 454
RL +R L++DLD+T+IH+ D V + PG VL+ + + P
Sbjct: 158 RLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSC 217
Query: 455 FFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 577
+++ RP + FL +S+ YEL ++T + Y VA +D
Sbjct: 218 YYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 258
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +2
Query: 467 KRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLDNGRGILRRRFYRQHCTAEHGSSY 646
KRP +DYFL +S +YE+V+FT + DK+D + R+ E G
Sbjct: 202 KRPGLDYFLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSISAVLTRESSKYEKGKVI 261
Query: 647 TKKSVIN 667
S +N
Sbjct: 262 KDLSYLN 268
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +2
Query: 437 DKHPVRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLDNGRGILRR 601
D H + F H + ++ +++ +W ++V + A+++IY +D+ G++ R
Sbjct: 25 DVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLR 79
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -2
Query: 541 HRRSKHNQLIPL*NYIQKVVYMRPLMNKKSNWMFVDSDFQDKVRRRTR-LNSGPDH 377
H ++ N++ NY++++ PL++++S+ F ++ Q+ R T +N G D+
Sbjct: 197 HNKTSQNRMEEALNYLKQLQKNEPLVHERSH-TFQQTNPQNNFHRHTNSMNIGNDN 251
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 130 LNNSNAEKVANGPSRVHASSIKSM-ELYLLYV 222
L N N + ANGP R+H S+K + E Y L V
Sbjct: 139 LANVNMDD-ANGPERLHYPSVKRLREAYSLLV 169
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 647 YMTIHVLLYSVACKNVSSGYLVHYLVC 567
Y+T++ L CK S Y +H++ C
Sbjct: 26 YLTLNKLFIDKFCKTQESTYPIHFVHC 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,620
Number of Sequences: 5004
Number of extensions: 59122
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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