Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25h13
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.68 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 466 MNKKSNWMFVDSDFQDKVRRRTRLNSG 386
           +N    W ++D DF +  RR+  + SG
Sbjct: 36  LNVIHKWKYLDYDFDNDERRQAAIQSG 62


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 463 NKKSNWMFVDSDFQDKVRRRTRLNSGPDHRIMMRM 359
           N   NW+  +    D+VR  TR     DH IM+ M
Sbjct: 350 NNVPNWVMGN---HDRVRVGTRYPGRADHMIMLEM 381


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 170 EGPFATFSALELFKKRSLTHKYPYF*TI 87
           +GPF       + K +++ +++P F T+
Sbjct: 299 QGPFTAEEVNYMLKAKNMENRFPLFTTV 326


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 347 ETLIHSHHDAMVRPTVKP 400
           E++ H HH+ +V   +KP
Sbjct: 20  ESVHHCHHNGVVHRDLKP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,265
Number of Sequences: 438
Number of extensions: 4077
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)