Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h12
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 29 0.49
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.86
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.6
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 4.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 4.6
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 26 4.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.0
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 6.0
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 8.0
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 8.0
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 25 8.0
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.49
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 68 KRIFTRKNA*E*S*NGEKCVSCSESGSR*HLRKRIIQRKTQLADNSARATSALTPQEAAL 247
+R +KN E EK V+ S R ++K I RK + + T+ + A++
Sbjct: 118 ERALLKKNELEGDDATEKFVTSSYKKHREEVQKAIEDRKEEDEKSITDTTTGMKDFYASM 177
Query: 248 LDSREQIHR 274
LD +E+IH+
Sbjct: 178 LDRQEKIHQ 186
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 28.7 bits (61), Expect = 0.86
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Frame = +3
Query: 132 VARAGAGDISERELFRE----RHNLQTTPPARL-----QRLHPKKQLFLTPVNKFTAKKP 284
VAR+ DI + E+ + R ++ +TPP Q L + F T N F +K P
Sbjct: 242 VARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLP 301
Query: 285 ESSVNLARIKSCL-DEYRK--QGRPPKIGHKAA--SMEDLTPT 398
ES+ + ++ L E R+ QG P G ++ ++E + P+
Sbjct: 302 ESTPAVEKVSENLGSETRESLQGAKPAAGAHSSDNALEQIKPS 344
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 333 RKQGRPPKIGHKAASMEDLTP-TKRSKIENLNATKKDK 443
RK+GRPPK + A + ++TP S + + +AT + +
Sbjct: 426 RKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQSE 463
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +3
Query: 612 QVSALKSLLDSDNVKVRLAMRELDRLKQLL 701
QVSA +++L + +++ RE++++KQL+
Sbjct: 133 QVSARENILQRETSEIQRLEREIEKVKQLI 162
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 387 LTPTKRSKIENLNATKKDKE 446
L P+K+ KIENL+ +K K+
Sbjct: 832 LPPSKKKKIENLSTVQKPKD 851
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 431 KERQGGSFSKASATWYSRGARRGPGGS 511
KE G S +WY RG + GP +
Sbjct: 80 KETPSGGRSSIEGSWYVRGKKLGPAAT 106
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 142 ALATGDALLAILGLFSGIFSCKNSFKISLFGRSVSQCD 29
AL T AL A+ F I++ + F I L SVS CD
Sbjct: 587 ALCTEAALNAVRRTFPQIYTSSDKFLIDLNEISVSICD 624
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 445 SLSFFVAFK-FSILLLFVGVKSSIEAALCPIFG 350
+++FF+ + I+L+F+G KS + L P+FG
Sbjct: 2184 TIAFFLFLSMWIIMLMFLGRKSLTHSWLLPVFG 2216
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 165 RELFRERHNLQTTPPARLQRLHPKKQLFLTPVNKFTAKKPESSVNLARIKSCLDEYRKQG 344
RELF +R L+ P + R PKK P N + K S V++ ++ +KQ
Sbjct: 71 RELFDQRRLLEAGRPDGVLRFRPKKS---GPKNDIST-KVASKVSVTMATKFAEKKKKQD 126
Query: 345 R 347
R
Sbjct: 127 R 127
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 8.0
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Frame = +3
Query: 270 TAKKPESSVNLARIKSCLDEYRKQGRPPKIGHKAASMEDLTPTKRSKIEN-LNATKKDK- 443
T+ P+SS +L++ + E+ PP I ++S L P R ++N +N K K
Sbjct: 10 TSHLPQSSSSLSQSREIAKEFTSNIPPPTIKTNSSSSNILKP--RLSLQNEVNQLKPAKF 67
Query: 444 EVHLVRPALRGIVEERAAARVGRFMLVTAWRRRRDEVRCLRKTLEFQVSCSERLRMQVSA 623
++ P V+ + A+ R ++ R + VS S SA
Sbjct: 68 PSKMLPPGSLASVKSSSLAKKARPFTASSNPRMPKSAHPISSR---SVSASSHFGRPASA 124
Query: 624 LKSLLD-SDNVK 656
+ S L+ SD+V+
Sbjct: 125 VSSSLNSSDDVR 136
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 564 RKTLEFQVSCSERLRMQVSALKSLLDSDNVKVRLAMRELDR 686
R+TLEF E LR +V L++L D + + + LDR
Sbjct: 323 RQTLEFYEIEIEVLREKVEKLQALSDEKDFYISKLEKSLDR 363
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 139 LATGDALLAILGLFSGIFS 83
+ATGD ++ I G+FSG S
Sbjct: 167 IATGDEIIKIEGIFSGTLS 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,104
Number of Sequences: 5004
Number of extensions: 55049
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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