Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h09
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 48 1e-06
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 44 1e-05
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.32
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.32
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 27 1.7
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 1.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 4.0
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 4.0
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 4.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 26 5.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.2
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 26 5.2
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 5.2
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 26 5.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.2
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 6.9
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 9.1
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 25 9.1
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.1
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 449 EVIRSTKLPIARIKNIMKMDPDV--NIVSSDAVFLVTKATEMFLETIVKETYAFTSSNKR 622
+ +++ LP+ARIK +MK D DV ++S++A FL K +E+F+ + + N+R
Sbjct: 102 QAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQR 161
Query: 623 KVI 631
+ +
Sbjct: 162 RTL 164
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Frame = +2
Query: 431 EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTS 610
E K ++ P+ARIK IM+ D DV V+ +++KA E+F+++I++E+ T
Sbjct: 11 ETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTR 70
Query: 611 SNKRKVIS 634
++ K ++
Sbjct: 71 LHQAKRVT 78
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 296 VDISDITEHSESYLEN--EHLKFALTEATEADNNKLE 400
VD++D+T H + L+N E L F+ E ++ D N+ E
Sbjct: 31 VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 260 LKNMSEEECHEDVDISDITEHSES---YLENEHLKFALTEATEADNNKLEFELNSEEQVH 430
++ ++E H+ DI D+ + + +++N HL + + ++FE+ E VH
Sbjct: 2007 IERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVH 2066
Query: 431 EKKQKTEVIRSTK 469
+++ T+
Sbjct: 2067 ANSPSVLIVQLTR 2079
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/49 (22%), Positives = 28/49 (57%)
Frame = +2
Query: 290 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 436
E VD +++ ++ +E + +A + E+D+++ +FE EE + ++
Sbjct: 6 EVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDFEGLEEETIIDR 54
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 344 EHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNI 523
EH K A+ A + N +E EQ+ K T+++RS IKN +K D
Sbjct: 235 EHCKSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI------IKNQLKFHQDAAA 288
Query: 524 VSSD 535
SD
Sbjct: 289 ALSD 292
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 SSLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHE 433
SS N+S ++ + I+ +T++ + Y+E HL+F + L L S
Sbjct: 132 SSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSLRVTST 191
Query: 434 KKQKTEVIRST-KLPIARIKNIMKMD 508
TE + ST +P + I I+ +D
Sbjct: 192 DASFTEYLLSTDPIPSSCIHKIITVD 217
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 4.0
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Frame = +2
Query: 143 LPNITLS-AYYSLCSNCK-ILLARKFWNKIFTF*STYKLSSLKNMSEEECHEDVDISDIT 316
L NI+ + YY+L ++ + I +KF ++ T ST SS +N S +D+SD
Sbjct: 205 LSNISFNYVYYTLENDSENINEVKKFEDEEDT--STPNTSSFQNNSSS-----LDLSDNL 257
Query: 317 EHSESYLENEHLKFALTEA------TEADNNKLEF---ELNSEEQVHEKKQKTEV-IRS- 463
+ YLE K T+A ++ NK ++ + +E+++E +K + +RS
Sbjct: 258 SYLLQYLEGNRSKINATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEKVVLELRSY 317
Query: 464 TKLPIARIKNIMKMD-PDVNIVSSDAVFLVT 553
T+ +A + + K D PD V + + L T
Sbjct: 318 TEHSLAFLTKVSKRDAPDYYTVIKEPMDLGT 348
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.0
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Frame = +2
Query: 263 KNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADN---NKLEFELNSEEQVHE 433
+ +SE+ E D+ +I + LE+E + +E DN N + E+ +E +
Sbjct: 225 EKLSEQAKRERDDLKNIMQ-----LEDESVSTTSVHDSEDDNLDSNNFQLEIGTEAKSAA 279
Query: 434 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 613
+ E+I+S R K +K + FLVTK E++ E + +S
Sbjct: 280 PDEPQEIIKSVSGGKRRGKRKVK---KYATTKDEEGFLVTKEEEVWESFSEDENISTGTS 336
Query: 614 N 616
N
Sbjct: 337 N 337
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 302 ISDITEHSESYLENEHLKFALTEATEADNNKLEF 403
I+ I +HS SY + + E D NKL F
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKNKLPF 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +2
Query: 410 NSEEQVHEKKQKTEV-IR--STKLPIARIKNIMKMD---PDVNIVSSDAVFLVTKATEMF 571
+SE+ +++ K E+ ++ ST +A +I+ MD P +I SSD FL+ + +
Sbjct: 99 DSEDDLYQMYSKFEMQVKKLSTNYGLAVAFSIVPMDDDQPSPSIFSSDESFLIVEGDDFS 158
Query: 572 LETIVKETYAFTS 610
L V+E TS
Sbjct: 159 LGNSVEEDANATS 171
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = -3
Query: 88 NYVCNKFLFKYLSLF 44
+++C+ +LFKY+SLF
Sbjct: 89 SFLCSPYLFKYISLF 103
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 530 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVIS 634
S V+ T+A ++FLE ++++ +T KRK ++
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVT 83
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +2
Query: 275 EEECHEDVDISDITEHSESYL-------ENEHLKFALTEATEADNNKLEFELNSEEQVHE 433
+E+ E++D +I E S+ + +NE L+ L + E + K++ E +SEE++
Sbjct: 690 DEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMN 749
Query: 434 KKQ 442
+Q
Sbjct: 750 DEQ 752
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 530 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVIS 634
S V+ T+A ++FLE ++++ +T KRK ++
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVT 83
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +2
Query: 272 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 451
SE E ++D SDI + + LE + + + + N+K + +++ + E +
Sbjct: 182 SESEASLEID-SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLH 240
Query: 452 VIRS 463
+IR+
Sbjct: 241 LIRN 244
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 530 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVIS 634
S V+ T+A ++FLE ++++ +T KRK ++
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVT 83
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/68 (29%), Positives = 40/68 (58%)
Frame = +2
Query: 383 DNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKAT 562
+NN L+ + +S+ ++EK + ++ T L I R NI++ DP V D+++L+
Sbjct: 945 ENNDLKSKFSSD--MYEKLRG--FLKPTNLTIQR--NIIEFDPPVYRKKEDSIYLL---- 994
Query: 563 EMFLETIV 586
+M L+++V
Sbjct: 995 DMCLQSVV 1002
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 254 SSLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHE 433
S ++ EEE E + S++++ SES E+E E +E++ E E + +
Sbjct: 83 SDSESSEEEEETESEEDSEVSDESESESESES---ESEEESESEEESDESERSGPSSFLK 139
Query: 434 KKQKTE 451
K +K E
Sbjct: 140 KPEKEE 145
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 377 EADNNKLEFELNSEEQVHEKKQKTEVIRSTK 469
E D N +F +++ + VHE K T ++STK
Sbjct: 2 EIDQNLFQFPISTRDAVHE-KNCTLRVKSTK 31
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 167 YYSLCSNCKILLARKFWNKIFTF 235
Y +L C+I+L R + K+F F
Sbjct: 328 YLTLLDRCEIILWRNLFRKVFLF 350
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 248 KLSSLKNMSEEECHED--VDISDITEHSESYLENEHLKFALTEATEADN 388
K SS +N S E E VD ++ HS + E EH K + + + N
Sbjct: 3 KNSSHENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQQQN 51
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 9.1
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +2
Query: 248 KLSSLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEAT---EADNNKLEFELNSE 418
K+S ++ +EE + IS E +++ E + ++++ EAT NK + E+ E
Sbjct: 539 KVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGEV-LE 597
Query: 419 EQVHEKKQKTEVIRSTKLPIARIKN 493
+ V E + ++ S+ I ++K+
Sbjct: 598 QVVAESEAAKNMVESSNASIQQLKS 622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,802
Number of Sequences: 5004
Number of extensions: 39027
Number of successful extensions: 145
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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