Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h09
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical ... 55 4e-08
AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans N... 44 7e-05
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 33 0.13
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 33 0.13
AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical ... 31 0.52
U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 28 4.9
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 28 4.9
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 28 6.4
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 27 8.5
U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily as... 27 8.5
U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC090999-12|ABD63206.1| 257|Caenorhabditis elegans Hypothetical... 27 8.5
>AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical
protein Y53F4B.3 protein.
Length = 179
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/73 (31%), Positives = 47/73 (64%)
Frame = +2
Query: 413 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKE 592
SEE V E ++ E + ++LP+ R+K +++M+PDV +++++A+ L+ KA E+F++ +
Sbjct: 17 SEEDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNA 76
Query: 593 TYAFTSSNKRKVI 631
+ KRK +
Sbjct: 77 ANQNAALEKRKTV 89
>AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans
NFYC-1 protein protein.
Length = 232
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Frame = +2
Query: 413 SEEQVHEKKQK-TEVI--------RSTKLPIARIKNIMKMDPDVN--IVSSDAVFLVTKA 559
+E+ EKKQK TE+ ++ +P+AR+K IM++D DV +++SDA + +A
Sbjct: 82 TEDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQA 141
Query: 560 TEMFLETIVKETYAFTSSNKRKVI 631
E F+E + + + S +R+++
Sbjct: 142 AEFFIEEMTAMGWQYVSEARRRIL 165
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/84 (26%), Positives = 44/84 (52%)
Frame = +2
Query: 257 SLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 436
++ N+ E+ +E+ D + E E ENE A+ E ++D + E + ++EE V +K
Sbjct: 431 AIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVSKK 489
Query: 437 KQKTEVIRSTKLPIARIKNIMKMD 508
K++ + + K +K + +MD
Sbjct: 490 KEEKKKEKKAK----EVKEVGRMD 509
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/84 (26%), Positives = 44/84 (52%)
Frame = +2
Query: 257 SLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 436
++ N+ E+ +E+ D + E E ENE A+ E ++D + E + ++EE V +K
Sbjct: 431 AIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVSKK 489
Query: 437 KQKTEVIRSTKLPIARIKNIMKMD 508
K++ + + K +K + +MD
Sbjct: 490 KEEKKKEKKAK----EVKEVGRMD 509
>AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical
protein W10D9.4 protein.
Length = 403
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 428 HEKKQKTEVIRSTKLPIARIKNIMK--MDPDVNIVSSDAVFLVTKATEMFLETIVKETYA 601
H K + + + LPIA + IMK MDP + + DA + F+ I E
Sbjct: 52 HPNKSQVLLDQERFLPIANVVRIMKTQMDPQAKL-AKDAKECAQECVSEFISFIASEAAE 110
Query: 602 FTSSNKRKVIS 634
+ KRK I+
Sbjct: 111 ICNITKRKTIT 121
>U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical
protein T24G10.2 protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 410 NSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAV 541
+ E+ EKK+KTE ++ +LP+ + K +K D D + DAV
Sbjct: 86 SDHEEGEEKKEKTEKVKKEELPV-KAKKEVKEDSDSDSGVEDAV 128
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 272 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 451
SE++ E V I D T ++ N++ KF + NN +L +++ +KK+K E
Sbjct: 12 SEQKRKEKV-IEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDE 70
Query: 452 VI 457
++
Sbjct: 71 LL 72
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 28.3 bits (60), Expect = 4.9
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Frame = +2
Query: 248 KLSSLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQV 427
KL + +N E C + + ++ H+ E + + A + + + + +
Sbjct: 350 KLQTARNFIMEGCEKIKNSEELWLHAIRLHPPELGRSIVANAVRSCPHSVRLWCKASDLE 409
Query: 428 HEKKQKTEVIRSTKLPIARIKNIMKM-----DP-DVNIVSSDAVFLVTKATEMFLETIVK 589
+ K K +V+R I + K DP D I+ + AV + +TEM+L
Sbjct: 410 QDLKDKKKVLRKALEQIPSSVKLWKAAVELEDPEDARILLTRAVECCSSSTEMWLALARL 469
Query: 590 ETYAFTSSNKRKVIS 634
ETY N RKV++
Sbjct: 470 ETY----ENARKVLN 480
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 558 ALVTKNTASLDTIFTSGSIF--IMFLILAIGSFVDLI 454
A TKN DT F SIF +M +I AI S VD +
Sbjct: 166 AYCTKNEVKKDTPFWGFSIFLIVMVVIAAIASIVDYV 202
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 245 YKLSSLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 397
YK L +S + V IS + SYLE+ H + + T AD N L
Sbjct: 251 YKKVDLTRVSATQVGTGVAISPFFSNVLSYLESSHAIKFIEKLTNADKNTL 301
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 293 DVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKL 472
D ++D+ E +E E EA E +E EE+V E K+K E +R
Sbjct: 121 DESMADVMEEINQEVEEEEEG----EAEEGQEEVVEEVEEDEEEVEEIKEKVEEVREVTP 176
Query: 473 PIARIKNIMK 502
P I + K
Sbjct: 177 PKDLINGMPK 186
>U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily
assigned gene nameprotein 151 protein.
Length = 785
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 275 EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 430
EE+ ED+D SD E + E E + +EA E +++ F+ +E ++
Sbjct: 384 EEDSDEDMDDSDNEEVEDDSEEEEPMDDLKSEAGETTASEMMFDDGIDEDIN 435
>U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical
protein F47D12.5 protein.
Length = 633
Score = 27.5 bits (58), Expect = 8.5
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +2
Query: 122 INYFTLRLPNITLSAYYSLCSNCKILLARKFWNKIFT-F*STYKLSSLKNMSEEECHEDV 298
+ Y + N+ + S N + L+ R + F F + L+ L+ +
Sbjct: 101 LTYLDISETNVPNISGISSLKNLESLIMRSVELECFEQFVDLFNLTGLRILDVSRSMYKH 160
Query: 299 DISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKL 472
D I ++ +S + L+F T+ + N LE LNS + + + IRS L
Sbjct: 161 DTKIINQYVQSNKVLKELRFLECSGTDINKNLLEQILNSHDNLQQVAAINCHIRSLSL 218
>AC090999-12|ABD63206.1| 257|Caenorhabditis elegans Hypothetical
protein Y82E9BR.23 protein.
Length = 257
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +2
Query: 245 YKLSSLKNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQ 424
Y +K E D+DI + YL+ EH T+ N F+L ++++
Sbjct: 70 YPRRDVKKFQEVREGNDLDILQSFDDESEYLDKEHSSRIRDLETKKRNCIANFKLKNKKE 129
Query: 425 VHE 433
V E
Sbjct: 130 VEE 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,180
Number of Sequences: 27780
Number of extensions: 208756
Number of successful extensions: 670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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