Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25h09
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           25   0.61 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.1  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 563 EMFLETIVKETYAFTSSNKRKVIS 634
           ++FLE ++++   +T   KRK ++
Sbjct: 60  KVFLENVIRDAVTYTEHTKRKTVT 83


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 535 IARYNIYIWVHFHNVFNSRYRKLCR 461
           I  Y IYIW       + ++RKL R
Sbjct: 543 IPGYMIYIWFTTSGTISEKFRKLIR 567


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 535 IARYNIYIWVHFHNVFNSRYRKLCR 461
           I  Y IYIW       + ++RKL R
Sbjct: 596 IPGYMIYIWFTTSGTISEKFRKLIR 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,931
Number of Sequences: 438
Number of extensions: 2670
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)