Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25h04
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    29   0.48 
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    26   5.9  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   5.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.8  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 308 VNDFNSSIASFPRTLSQLRLKWENLKKLANAA 403
           V+  ++ + SFPRTL    ++W++LK L   A
Sbjct: 175 VSSISNPLYSFPRTLLPYNVRWQDLKDLFRQA 206


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 WENLKKLANAAPTYETTLKTEVPNGNT*RKKK 466
           + ++ KLAN  P   +T  TE+ N N  R+++
Sbjct: 45  YSDISKLANPVPEDSSTGPTEIANPNVERRQE 76


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 WENLKKLANAAPTYETTLKTEVPNGNT*RKKK 466
           + ++ KLAN  P   +T  TE+ N N  R+++
Sbjct: 45  YSDISKLANPVPEDSSTGPTEIANPNVERRQE 76


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 230 PQVLLESSSHLLTWVLPFLTGKNIFSKLE 144
           P+VL+  +S+   W+L F+T K I + LE
Sbjct: 245 PKVLVAWASNF-AWILGFITNKEIENSLE 272


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 416 FHKLAQRLRASLSFPILVEVAIEFVGNLLSTN*NHLQGFTEPIPSIN 276
           FH     +R SL F I + VA    GN+ S +   L      IP  N
Sbjct: 784 FHLSLSHIRISLFFYIFINVAFFGTGNVASLSTFALDSVKRFIPVFN 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,178
Number of Sequences: 5004
Number of extensions: 45374
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)