Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h03
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 29 0.50
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.66
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 29 0.88
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 28 1.2
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 26 6.2
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 6.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 6.2
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.2
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 6.2
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 6.2
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 8.2
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 25 8.2
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 25 8.2
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 343 LLTLEKESLKHITWKWREKRIGYSMIMTSNG 435
+LT K TW W+ K +G ++ TS+G
Sbjct: 414 VLTAHKNDSSARTWNWKSKTLGQHVLPTSDG 444
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.1 bits (62), Expect = 0.66
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +3
Query: 330 SFEGIAYFGERIVEAHHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQ 509
SF+G ERI+E +++ K I ++ + + ID K + L E+ S +++ +T
Sbjct: 737 SFQGSTNSKERIIEYLLDKLDLRKKEIAAESTLWSNDGIDDKLRDLREQMSRQSSQPSTV 796
Query: 510 A--IRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKMK 641
+ ++ K+F + L R + +A+ + +E+ K MK
Sbjct: 797 STILQIPDKKFHRPFPRHLHR---YVGRSASESLTSEKDESIKSMK 839
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.7 bits (61), Expect = 0.88
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = +3
Query: 330 SFEGIAYFGERIVEAHHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQ 509
S +GI+ R+ + M + EKD I+ D K D KC K+ E + N +T
Sbjct: 1007 STKGISEVESRVDKIQVMAWDHEKDEIVTLIDSKQDSLFDLKC-KMQEGWFIHSPNPSTD 1065
Query: 510 AIRQAFKEFSVVYMTSLTRIESLMSHAAN 596
K S + IE ++++A+N
Sbjct: 1066 V---NIKMGSFTMLCHKQPIEEILNYASN 1091
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -2
Query: 446 NCLFPFDVIIMEYPILFSLHFHVMCFNDSFSKVSNTFKTELRKMTFLYWFQNC 288
NC F D + YP +F +H ND F + T+ + R + W C
Sbjct: 130 NCGFLIDEKMRRYPGIFQIHPKDYTMNDLFPQSFPTWISVYRNVPEKAWANRC 182
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 366 VEAHHMEMEREKDRILHDNDVKWKEAID--AKCKKLWEE 476
+ AH E E ++ R++H + E ID AK + LW++
Sbjct: 47 IRAHFQEEEFQQIRLMHKRMLLRDEKIDELAKLEHLWQK 85
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 201 LKVLAGLEPRLKGGGSDWYIPPEDLLKGRAVLKPIQKCHLAQLSFEGIA 347
L++++G+E K G I PE++L R KPI + +L G+A
Sbjct: 132 LQIISGIEHIHKHGFMHRDIKPENILVKRISPKPISSRYSIKLGDFGLA 180
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 465 LWEEC--STEAANRNTQAIRQAFKEFSVVYMTSLTR 566
LW C + E +N + + F+E S+VY +T+
Sbjct: 621 LWTACCVTDEGKEKNIKIAVEIFREISIVYPNPITK 656
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +3
Query: 384 EMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQAI----RQAFKEFSVVYM 551
E+ EK+ L + + ++ DA + L + ++ +N I KE + + +
Sbjct: 992 ELLEEKENALIMMEEEMRQVNDANTELLRVNATLKSQLKNYDMIIVEQTSQLKEKNRI-I 1050
Query: 552 TSLTRIESLMSHAANIEVMRTSEETFKK 635
SLT+ +++ A++IE R SEE ++
Sbjct: 1051 ASLTKATKILNSASSIEQSRNSEEKSRR 1078
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 102 CYLKRQQVPTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRL 233
C++ Q+V Q +I + S+P+ + F S + V L+ ++
Sbjct: 172 CFVGYQEVAHQETVIGENSEPIVTIEFDSFNSNVPVTLKLQRQI 215
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 618 EETFKKMKNKYKALVKIQATKLYDEY 695
E+ FK++ Y+ L Q KLYD+Y
Sbjct: 42 EKKFKEISLAYEVLSDPQRRKLYDQY 67
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 531 EFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKMKNKYKALVKIQATKLYDEYTKKLD 710
E V +MTSL+++ SLM + E+ + ++ + L+K Y E ++L
Sbjct: 246 EAEVAFMTSLSQLTSLMEDMIKYTLNSLMEQNYH--RDHWDQLLKPWKCMTYSEAIEELS 303
Query: 711 A 713
A
Sbjct: 304 A 304
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVY-MTSLTRIESLMSHAANIEVMRTSEETFKK 635
K+LW+ + +R + ++Q + ++VY T+ ++ + + N E+ +E +
Sbjct: 341 KRLWQNAKADEIDRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTV 400
Query: 636 MK 641
+K
Sbjct: 401 VK 402
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 249 DWYIPPEDLLKGRAVLKPIQKCHLAQLSFEGIAYFGE 359
DW PP+D + ++KP Q+ + +E +FGE
Sbjct: 197 DWMNPPDDDNRPSWLIKPFQRIIASDCIYE--THFGE 231
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 621 ETFKKMKNKYKALVKIQATKLYDEYTKKLDAE 716
E F+ ++ KYKAL + K ++ ++ DAE
Sbjct: 73 ERFEMIRQKYKALTADEIQKYKNKLQEQFDAE 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,690
Number of Sequences: 5004
Number of extensions: 63290
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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