Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25h03
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr... 33 0.15
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend... 33 0.15
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo... 33 0.15
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor... 33 0.15
AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein. 32 0.36
AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle defec... 32 0.36
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 32 0.47
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 32 0.47
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 32 0.47
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 32 0.47
U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical pr... 31 1.1
U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical pr... 31 1.1
U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF016665-3|AAC71182.3| 330|Caenorhabditis elegans Nuclear hormo... 31 1.1
AF016654-8|AAB66025.2| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
Z83107-3|CAB05500.1| 529|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.5
AC024801-3|AAK68511.3| 852|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81486-7|CAB03989.1| 480|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 4.4
U58755-16|AAB00705.2| 512|Caenorhabditis elegans Hypothetical p... 29 4.4
Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC006630-4|AAK68324.1| 311|Caenorhabditis elegans Hypothetical ... 28 5.8
Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical p... 28 7.7
Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical p... 28 7.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.7
AC024830-4|AAF59603.1| 211|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
protein F52B5.1 protein.
Length = 1119
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 114 RQQVPTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLKGGGSDWYIPPED 272
RQ + +VMI S +++ TPKL V + P +G G W+IPP D
Sbjct: 679 RQLLSDFAVMIAIASMTFVDIFVGVNTPKLNVPSTFRPTWEGRG--WFIPPFD 729
>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
chloride bicarbonateanion exchanger alternative variant
a protein.
Length = 1161
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 114 RQQVPTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLKGGGSDWYIPPED 272
RQ + +VMI S +++ TPKL V + P +G G W+IPP D
Sbjct: 721 RQLLSDFAVMIAIASMTFVDIFVGVNTPKLNVPSTFRPTWEGRG--WFIPPFD 771
>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
transporter ABTS-1 protein.
Length = 1119
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 114 RQQVPTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLKGGGSDWYIPPED 272
RQ + +VMI S +++ TPKL V + P +G G W+IPP D
Sbjct: 679 RQLLSDFAVMIAIASMTFVDIFVGVNTPKLNVPSTFRPTWEGRG--WFIPPFD 729
>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
protein.
Length = 1119
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 114 RQQVPTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLKGGGSDWYIPPED 272
RQ + +VMI S +++ TPKL V + P +G G W+IPP D
Sbjct: 679 RQLLSDFAVMIAIASMTFVDIFVGVNTPKLNVPSTFRPTWEGRG--WFIPPFD 729
>AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein.
Length = 529
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 351 FGERIVEA---HHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQAIRQ 521
F ER++++ +H E+E L D + +W E + ++LWE+C A+R+ I +
Sbjct: 222 FSERLLDSLQSYHSELEPLYKHWLEDIEFRWTEK-HQQLQELWEKCLVSEADRHYSPIFE 280
Query: 522 AFK 530
K
Sbjct: 281 PTK 283
>AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle
defective protein 1 protein.
Length = 529
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 351 FGERIVEA---HHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQAIRQ 521
F ER++++ +H E+E L D + +W E + ++LWE+C A+R+ I +
Sbjct: 222 FSERLLDSLQSYHSELEPLYKHWLEDIEFRWTEK-HQQLQELWEKCLVSEADRHYSPIFE 280
Query: 522 AFK 530
K
Sbjct: 281 PTK 283
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 31.9 bits (69), Expect = 0.47
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
++ WEE + E NRNT A+ + V L R+ + + + E R +EE K+
Sbjct: 1562 QRRWEESNHEMTNRNT-ALTKECDRLRVEMRDQLNRMNGINLRSVDFE--RKNEELSSKL 1618
Query: 639 KNKYKALVKIQATKLYDEYTKKLDAE 716
+ A K ++E K+L+AE
Sbjct: 1619 IVMQNT---VTAMKKFEEEWKRLEAE 1641
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 31.9 bits (69), Expect = 0.47
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
++ WEE + E NRNT A+ + V L R+ + + + E R +EE K+
Sbjct: 1562 QRRWEESNHEMTNRNT-ALTKECDRLRVEMRDQLNRMNGINLRSVDFE--RKNEELSSKL 1618
Query: 639 KNKYKALVKIQATKLYDEYTKKLDAE 716
+ A K ++E K+L+AE
Sbjct: 1619 IVMQNT---VTAMKKFEEEWKRLEAE 1641
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 31.9 bits (69), Expect = 0.47
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
++ WEE + E NRNT A+ + V L R+ + + + E R +EE K+
Sbjct: 1322 QRRWEESNHEMTNRNT-ALTKECDRLRVEMRDQLNRMNGINLRSVDFE--RKNEELSSKL 1378
Query: 639 KNKYKALVKIQATKLYDEYTKKLDAE 716
+ A K ++E K+L+AE
Sbjct: 1379 IVMQNT---VTAMKKFEEEWKRLEAE 1401
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 31.9 bits (69), Expect = 0.47
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
++ WEE + E NRNT A+ + V L R+ + + + E R +EE K+
Sbjct: 1562 QRRWEESNHEMTNRNT-ALTKECDRLRVEMRDQLNRMNGINLRSVDFE--RKNEELSSKL 1618
Query: 639 KNKYKALVKIQATKLYDEYTKKLDAE 716
+ A K ++E K+L+AE
Sbjct: 1619 IVMQNT---VTAMKKFEEEWKRLEAE 1641
>U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical
protein F41H10.6a protein.
Length = 863
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
KK+ E T ++ + + +A KEF+ +Y LTR ++ A V+++ +E F+K
Sbjct: 489 KKMLEHLRTTETMKDEELMEEAEKEFNSIY---LTRDTLKVARKAVGAVLQSVDEIFEKD 545
Query: 639 KNKYKALVKIQ 671
+ ALV ++
Sbjct: 546 AGQRNALVIVR 556
>U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical
protein F41H10.6c protein.
Length = 957
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
KK+ E T ++ + + +A KEF+ +Y LTR ++ A V+++ +E F+K
Sbjct: 491 KKMLEHLRTTETMKDEELMEEAEKEFNSIY---LTRDTLKVARKAVGAVLQSVDEIFEKD 547
Query: 639 KNKYKALVKIQ 671
+ ALV ++
Sbjct: 548 AGQRNALVIVR 558
>U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical
protein F41H10.6b protein.
Length = 955
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +3
Query: 459 KKLWEECSTEAANRNTQAIRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKM 638
KK+ E T ++ + + +A KEF+ +Y LTR ++ A V+++ +E F+K
Sbjct: 489 KKMLEHLRTTETMKDEELMEEAEKEFNSIY---LTRDTLKVARKAVGAVLQSVDEIFEKD 545
Query: 639 KNKYKALVKIQ 671
+ ALV ++
Sbjct: 546 AGQRNALVIVR 556
>AF016665-3|AAC71182.3| 330|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 261 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 531 EFSVVYMTSLTRIESLMSHAANIEVMRTSEETFK 632
EFS V++ SL R SLMSH+ N E+ RT ++ K
Sbjct: 193 EFSNVWIDSL-REYSLMSHSHNKEISRTDKKVMK 225
>AF016654-8|AAB66025.2| 331|Caenorhabditis elegans Hypothetical
protein C17A2.1 protein.
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 531 EFSVVYMTSLTRIESLMSHAANIEVMRTSEETFK 632
EFS V++ SL R SLMSH+ N E+ RT ++ K
Sbjct: 194 EFSNVWIDSL-REYSLMSHSHNKEISRTDKKVMK 226
>Z83107-3|CAB05500.1| 529|Caenorhabditis elegans Hypothetical
protein F32A7.4 protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 351 FGERIVEAHHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQAIRQAFK 530
FG ++ EA E+ E DRI+ + WK ++ K+ S N I + +
Sbjct: 137 FGGKVQEAQQYEIRNEVDRIMKKENFNWK-PLEITTKESAAAYSLARLAPNYAEITRTLE 195
Query: 531 EFSVV 545
EF+ +
Sbjct: 196 EFNTI 200
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 378 HMEMEREKDRIL--HDNDVKWKEAIDAKCKK 464
HM++ +K RIL +DND KWK +D + K
Sbjct: 27 HMDLPVDKLRILRGYDNDKKWKLIVDQQVAK 57
>AC024801-3|AAK68511.3| 852|Caenorhabditis elegans Hypothetical
protein Y50D7A.4 protein.
Length = 852
Score = 29.1 bits (62), Expect = 3.3
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Frame = +3
Query: 330 SFEGIAYFGERIVEAHHMEMEREKDRILHDND-VKWKEAIDAKCKKLWEECSTEAANRNT 506
+F + +GE + +AHH++ H N ++ + C + CS R
Sbjct: 503 AFRSVNKYGEALRKAHHIDF--------HFNTWIEDQYDFHTYCLRKMTLCSYIRLLRMC 554
Query: 507 QAIR------QAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKMKNKYKALVKI 668
+R Q K +Y+ + R + + H+A I+ T +E KKMK K K ++
Sbjct: 555 DKLRDADYYYQGAKLAIKIYLRMIDRPDDMNEHSALIKEGMTDQE-IKKMKKKLKKQKEL 613
Query: 669 QATKLYDEYTKKLDAE 716
Q +E KK D E
Sbjct: 614 QE----EEEKKKKDKE 625
>Z81486-7|CAB03989.1| 480|Caenorhabditis elegans Hypothetical
protein C53A5.9 protein.
Length = 480
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +3
Query: 402 DRILHDNDVKWKEA-IDAKCKKLWEECSTEAANRNTQAIRQAFKEFSVVYMT-SLTRIES 575
D+ L D ++ E+ ++ + K+L E+CS EA+ + ++++FK ++ +T SL ES
Sbjct: 76 DQPLEYQDAQFSESEMETQMKEL-EDCSIEASRVFLENLQKSFKLMKLLQLTQSLNPQES 134
Query: 576 LMSHAANIEVMRTSEETFKKMKNKYKALVKI 668
+ M+ +T ++K K + I
Sbjct: 135 SYNRKIISTEMKKINDTVSQLKYAGKRIEMI 165
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 667 IFTRALYLFFIFLNVSSLVLMTSMLAACDIKDSILVKDVI*TTENSLNACRIAWVFLFAA 488
I +A ++FF+F VSS+V + + + L+K VI T E A + F +
Sbjct: 263 ILKQAFFVFFVF-QVSSVVFLLCQTVKFGVATAFLIKRVINTMEILAGAATPCFFFFTSK 321
Query: 487 SVE 479
++
Sbjct: 322 EIK 324
>U58755-16|AAB00705.2| 512|Caenorhabditis elegans Hypothetical
protein C34D4.1 protein.
Length = 512
Score = 28.7 bits (61), Expect = 4.4
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Frame = +3
Query: 369 EAHHMEMEREKDRILHDNDVKWKEAIDAKC--KKLWEECSTEAANRNTQAIRQAFKEFSV 542
+AHH E ++K+R + + K K A + K +K E S + R Q + KE
Sbjct: 263 DAHHKEWLQKKEREIREKKAKEKAAAEQKAATEKERRENSAKLYQRWVQDHDKKAKELK- 321
Query: 543 VYMTSLTRIESLMSHAANIEVMRTSEETFKKMKNKYKALVKIQATKLYDEYTKKLDAE 716
T R +S + ++ +E+ ++ K + V KL E KK E
Sbjct: 322 SKKTQQERKKSENEKTTQDQKLKEAEKNYEMWKRERSKSVTDIRKKLEQEEDKKRKKE 379
>Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical
protein F28H7.11 protein.
Length = 336
Score = 28.3 bits (60), Expect = 5.8
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Frame = -2
Query: 476 FLPKFF---TFSVNCLFPFDVIIMEYPILFS---LHFHVMCFNDSFSKVSNTFKTELRKM 315
F+PKFF +F +N LF F ++ Y + S L F+ FN S S + +TF +
Sbjct: 9 FIPKFFALCSFLINPLFIFMIMKDTYLNMGSYKYLLFYFSIFNMSCS-LCDTF-VPICIF 66
Query: 314 TFLYWFQNCPAF*QIFWWDVPITASTFQSWF*TSQYLQFRRH*FEVNFGQRFRHFVYHNT 135
+ Y F F +++ P + F S Y+ +F R+ HN
Sbjct: 67 NYRYAFT---IFVADGYFETPSEFGRYLLGFRCS-YITGTYAILHAHFLYRYMTLFCHNF 122
Query: 134 LGRYLLPFQITFSQIKVL 81
L RY LP I S I L
Sbjct: 123 LERYFLPHGIVVSVIYCL 140
>AC006630-4|AAK68324.1| 311|Caenorhabditis elegans Hypothetical
protein F14H12.2 protein.
Length = 311
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 304 YKNVILRNSVLKVLLTLEKESLKHITWKWREKRIGYSMIMTSNGKRQLTLNVKNFGRNVQ 483
YKN+ N++L VL S K I W+ +K I + N + +++
Sbjct: 74 YKNLCWLNTMLNVLFKSTSFSKKFIEWQ-NDKSISNELGNIFNKNTKSASKLRSMMDKDF 132
Query: 484 RKPQTGIPKLFDRHLKS 534
RK IP F LK+
Sbjct: 133 RKGPQAIPNAFPAFLKN 149
>Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 337 KVLLTLEKESLKHITWKWREKRIGYSMIMTSNGKRQ 444
K L E LK T +W+ +G ++T+N KR+
Sbjct: 214 KATLNTSVEDLKLRTEEWKHNLLGQFEVLTANSKRE 249
>Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 337 KVLLTLEKESLKHITWKWREKRIGYSMIMTSNGKRQ 444
K L E LK T +W+ +G ++T+N KR+
Sbjct: 214 KATLNTSVEDLKLRTEEWKHNLLGQFEVLTANSKRE 249
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 126 PTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLK 236
P V+++K++KP+ KS T K + PRL+
Sbjct: 8833 PVPPVILNKLTKPITHQAGKSFTYKFNFMGAPAPRLR 8869
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 126 PTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLK 236
P V+++K++KP+ KS T K + PRL+
Sbjct: 8853 PVPPVILNKLTKPITHQAGKSFTYKFNFMGAPAPRLR 8889
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 126 PTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRLK 236
P V+++K++KP+ KS T K + PRL+
Sbjct: 8853 PVPPVILNKLTKPITHQAGKSFTYKFNFMGAPAPRLR 8889
>AC024830-4|AAF59603.1| 211|Caenorhabditis elegans Hypothetical
protein Y55F3BR.7 protein.
Length = 211
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 353 KVSNTFKTELRKMTFLYWFQNCPAF*QIFWWD 258
K S T ++ L++FQN P F IF+W+
Sbjct: 72 KTSITTDKKISDQNTLFFFQNFPIFSGIFYWN 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,969
Number of Sequences: 27780
Number of extensions: 355155
Number of successful extensions: 1219
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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