Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g18
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0453 - 17886095-17886868,17887928-17888043,17888300-178884...    28   2.4  
09_06_0221 - 21649030-21649290,21649553-21649610,21649943-216502...    27   3.2  
06_03_0288 - 19179619-19179714,19180209-19180300,19180408-191804...    27   4.2  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     27   4.2  
05_05_0268 + 23720837-23720914,23722398-23722486,23722669-237228...    27   5.6  
11_06_0267 + 21795762-21796190                                         26   9.8  

>11_04_0453 -
           17886095-17886868,17887928-17888043,17888300-17888423,
           17889734-17889963,17891395-17891452
          Length = 433

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 136 LCSPIYFCRQITNSKIILRLLRCP 207
           L S +YFC+++TNS +I     CP
Sbjct: 228 LQSVLYFCQRMTNSALITVAKNCP 251


>09_06_0221 -
           21649030-21649290,21649553-21649610,21649943-21650292,
           21650605-21650799
          Length = 287

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 153 IYRRTKTLXQPNQANTLWLAWMFQIFFFNFIGXCK 49
           I+     L +   A++LW  W  + F + F G CK
Sbjct: 74  IFSGLNILVKEEGASSLWRGWAGKFFGYGFQGGCK 108


>06_03_0288 -
           19179619-19179714,19180209-19180300,19180408-19180494,
           19180802-19180963,19181032-19181183,19181526-19181872
          Length = 311

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 266 NVFSQNFHIFIFYEQFL 216
           NVFS +F +++FY+ FL
Sbjct: 155 NVFSPSFRLYLFYQTFL 171


>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 136 LCSPIYFCRQITNSKIILRLLRCP 207
           L S +YFC Q+TN+ ++     CP
Sbjct: 369 LNSLLYFCHQMTNAALVTVAKNCP 392


>05_05_0268 +
           23720837-23720914,23722398-23722486,23722669-23722807,
           23722899-23722973,23723069-23723190,23723287-23723362,
           23723786-23723845,23723939-23724091
          Length = 263

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 310 EITIRCYRAYNGYN*MFSLK 251
           E++ RCY+ YNG N +  L+
Sbjct: 33  EVSSRCYKGYNGLNELHKLE 52


>11_06_0267 + 21795762-21796190
          Length = 142

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 191 GY*DVPGYLKIVHKI*KCESFERKHSVVSIVSSITAY 301
           GY    G++ IVH+  K  +F++    VS  + +TA+
Sbjct: 49  GYNRANGFMWIVHRKKKEHTFKKIKQTVSYATEVTAF 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,441,410
Number of Sequences: 37544
Number of extensions: 142296
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)