Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g17
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.9  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   5.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   5.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 543 CFLLYFFSCNPYCVIGYFRSFIECFFYKDKLQK 641
           CF++ F S   Y  +GY    I+    K++ QK
Sbjct: 290 CFVMVFASLLEYATVGYMAKRIQ--MRKNRFQK 320


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 543 CFLLYFFSCNPYCVIGYFRSFIECFFYKDKLQK 641
           CF++ F S   Y  +GY    I+    K++ QK
Sbjct: 290 CFVMVFASLLEYATVGYMAKRIQ--MRKNRFQK 320


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 543 CFLLYFFSCNPYCVIGYFRSFIECFFYKDKLQK 641
           CF++ F S   Y  +GY    I+    K++ QK
Sbjct: 229 CFVMVFASLLEYATVGYMAKRIQ--MRKNRFQK 259


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 218 SVGQLQFPWQWNL 180
           SV   Q+PWQW L
Sbjct: 92  SVFWQQYPWQWGL 104


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 304 KDQAIPKNNKVILNVDVSTSGMISQ*TLIA*VSFSFLGNGILYWF 170
           KD+ I   + V++   + TSG++ +   +  +   FL  GI+  F
Sbjct: 128 KDELITGWSAVVITAAICTSGIVGRTHTVGYIIIGFLLAGIVQPF 172


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 490 KLAINPSFFFNSFLMCVYVFFCTSFL 567
           K AI        FL+C   FFC + +
Sbjct: 269 KAAITVGVIMGVFLICWVPFFCVNIV 294


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 109 STFGCMEAAARHNLDIISFLLLYLEVQYIFI 17
           S  GC++A     ++++    LY+E  Y  I
Sbjct: 64  SQLGCLKACVMKRIEMLKGTELYVEPVYKMI 94


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 109 STFGCMEAAARHNLDIISFLLLYLEVQYIFI 17
           S  GC++A     ++++    LY+E  Y  I
Sbjct: 64  SQLGCLKACVMKRIEMLKGTELYVEPVYKMI 94


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -1

Query: 178 YWFGGNRSIRLTPKTRGVTFLITSTFGCM 92
           YW   N + ++  + +   FL   T  CM
Sbjct: 283 YWIDRNSAYKIDQRIQKGLFLFACTNSCM 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,981
Number of Sequences: 438
Number of extensions: 4372
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)