Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g16
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.56 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   6.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 83  QSNV*IKFVKMDSRKESLSTLKICR 157
           +SNV +KF +   RK+SL  +KI R
Sbjct: 113 KSNVCLKFEEQKRRKKSLDDVKILR 137


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 64  NQFCYNSIKCVNKVCENGLK 123
           N+ C   I C+N+V + G K
Sbjct: 475 NKRCNCDIDCINRVVQRGTK 494


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 536 DLSDTDMEDDENVYNIKIGDGPDDESNSARIKVITTDN 649
           DL +TDM       N ++   P D SN     + T DN
Sbjct: 194 DLVETDMTAQWLKENSRLALKPKDVSNCVLFALQTPDN 231


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 295 IHMHSLQVFHGPQL*VQENLSV 360
           +H H+  V H PQ    EN+ +
Sbjct: 104 LHPHTAMVTHLPQTLTSENVEI 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,555
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)