Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g15
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   4.7  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    25   8.3  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   8.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.3  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 333 QHLYIRGNILSQLSPFFLNKYVPDTYLRIT 244
           + L I G +  +L  FF++ YVP  Y+ +T
Sbjct: 426 RQLDILGLLPPRLRRFFVDDYVPSAYITLT 455


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 7   LIDILNV*IRKCFLQWLCKNSVRMVRILYQKFGREMCAVYFP 132
           L+D +   ++ CF    CKN    +R+LY +       +YFP
Sbjct: 250 LLDQIVKRMKICFTY--CKNDNPSIRLLYSECFFSYAEIYFP 289


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 97  FDRESEPFLHYSYKATVKSIFVFKHL 20
           F+ ESE  +H+S K  ++ +  FK L
Sbjct: 164 FEAESEKIIHHSLKGDIEYLPSFKFL 189


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 232 RHHGSDS*IRIRYVFIQEKWRQLAQNIAPDVQVLANCEQFIDI 360
           R H +D  I++    I++K RQL   I    +V  NCE  +D+
Sbjct: 761 RIHQNDDEIQVIKNDIEKK-RQLLGTIQDSEKVCDNCEGLLDV 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,160
Number of Sequences: 5004
Number of extensions: 39552
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)