Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g15
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.2  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 259 RIRYVFIQEKWRQLAQNI--APDVQVL 333
           RI+Y  + E WR +A  I  A DV  +
Sbjct: 12  RIQYAILNEAWRLVADGILNAKDVDAV 38


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 494 FFFTV*SYIIIILILFPT 441
           FF  + +YIII++ L P+
Sbjct: 413 FFIVIFTYIIILITLVPS 430


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 297 LSPFFLNKYVPD 262
           +S +F N Y+PD
Sbjct: 1   MSSYFANSYIPD 12


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 267 VRIYSGKMATAGSKYCPGCTSAGK 338
           V + S    TAG    PG  +AGK
Sbjct: 57  VPVGSAVAGTAGGALFPGMAAAGK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,170
Number of Sequences: 438
Number of extensions: 2679
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)